Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00053 ATGGCTACTTTAAACTTAGGCTCAGCGTCTCACTTTGTTGACCAGCTTCAACAACGCCCTGATCTCCACTTAGATTCGCCGCCCAGCTCCGATCATGTCACCAATCTCAACCACTTCAACGGCAGCGGTGGCTCCGGTGGTAGTGGAGATGCTATGGTTCGTCGACCTAGGGGTCGCCCAGCCGGGTCCAAGAACAAGCCAAAGCCACCCGTGATCATCACGCGCGAGAGCGCTAATACCCTCCGAGCTCATATCTTGGAAATCGGTAGCGGATATGATGTGTTCGAGGCTGTGGCTGGCTATGCGCGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGAAGTGGGATAGTGAATAATGTTAGCTTACGACAACCGGCTGCGGCTGGATCCGTGTTGACGTTACAAGGGAGGTTTGAGATTTTGTCCCTATCGGGATCGTTCTTACCACCACCTGCTCCACCAGGTGCTACTAGTCTCACAATTTTCTTGGCCGGAGGTCAAGGACAAGTGGTCGGAGGGAATGTCGTGGGAGCTTTGATTGCGTCGGGGCCTGTTATCGTTATAGCATCGTCATTCAGTAACGTTGCATACGAGAGGCTACCGTTGGATGAAGAAGAATTGTCGATGCCTGCAGCTGGTGGTGACGGAGATGGAGGCGAGGGCGGGGGCGGTGATGGCCACGACAACCCTTTTCCCGACGGATCTTCCGGTTTGCCCTTTCTAAATCTGCCTATGAATATGCCAAATCAGAATCAATTTTTTGGTTGA 771 53.18 MATLNLGSASHFVDQLQQRPDLHLDSPPSSDHVTNLNHFNGSGGSGGSGDAMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEIGSGYDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELSMPAAGGDGDGGEGGGGDGHDNPFPDGSSGLPFLNLPMNMPNQNQFFG 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 269123 270038 + Carg10179-RA Car17g00053 164425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00053 256 MobiDBLite consensus disorder prediction 22 44 - -
Car17g00053 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Car17g00053 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 210 - -
Car17g00053 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 253 - -
Car17g00053 256 Gene3D - 81 211 - -
Car17g00053 256 MobiDBLite consensus disorder prediction 20 71 - -
Car17g00053 256 MobiDBLite consensus disorder prediction 209 244 - -
Car17g00053 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 253 IPR014476 GO:0003680
Car17g00053 256 CDD DUF296 82 165 IPR005175 -
Car17g00053 256 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01091 Car-Chr16:9371877 Car17g00053 Car-Chr17:269123 3.82E-87 dispersed
Car17g00053 Car-Chr17:269123 Car19g00198 Car-Chr19:1863338 2.46E-78 dispersed
Car14g01831 Car-Chr14:14239553 Car17g00053 Car-Chr17:269123 4.80E-100 transposed
Car17g00053 Car-Chr17:269123 Car08g00860 Car-Chr8:5747239 4.18E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00053 - - csv:101203160 419.083