Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00072 ATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTCTGGTCCTCCACTCCTGTTGACGACGATCGCCTCCACCGCTACACTTCGGAGCCGGCCACCACCACGTCGTCGCCGGAACCCGTCGTTGAACCTCCGGTTCCGGTTCCTCCTCCGTCTGCGAGCACCGTCGTTAGAACCGAGTCTCCCAAGTCGGATACTAGAGACTCCAGGGTTAATAACAATGTGAGCAACGACGATAATGACACTTCTTCAGGTCCTTCTGCTGAGGACGTATCTCGCCAGGCACAGCTTCTCGTTGAGTTGTCGAAGAAGGTCATAAATCTGCGTGAATTGCGTAAAATTGCGTCTCAGGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTATTGGGTTATCTGCCACCAGATCGTGCGCTCTGGACGTCTGAGTTAGCTAAAAAGAGGTCTCAATACAAGCATTTCAAAGAAGAGCTTTTGATGAATCCTTCAGAAATTTCAAGGAGGTTGGAGAAAGCGAAAAGTTACGAGCATGATGAAACGAACAGAGGTCCACTCTCAAGGTCAGAAATAAGTCAAGAGGAACATCCTTTGAGTCTTGGGAAAACCAGCATTTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGACCGAGATGTGATGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGAGGCTCTGAGAAACATCTTAATTGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTTCAAGGGATGAATGAAATTTTAGCTCCTCTATTCTATGTATTTAGAAGTGATCCTGATGAGGATAATGCGGCATCTGCTGAAGCAGACACGTTCTTTTGCTTTGTTGAGTTGTTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTGGGAATTCGCGCCACAATCACAAAGTTGTCTCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAAGTAAACCCCCAGTTTTATGCATTTAGGTGGATCACTCTCCTCTTGACCCAGGAGTTCAATTTTGCAGACAGCCTTCATATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTGGAAACACTTCTCCGAATATGCTGCTCGATGTTGATTCTCATTAGACGACGCCTACTTGCTGGCGATTTTACAGCTAATCTCAAACTGCTTCAGCACTATCCCCCAGCAAACATCAGTCATTTGCTGTACGTTGCGAACAAGTTGCGTAAACAACCTTCGATCTGA 1335 45.99 MVKKRVPDWLNSSLWSSTPVDDDRLHRYTSEPATTTSSPEPVVEPPVPVPPPSASTVVRTESPKSDTRDSRVNNNVSNDDNDTSSGPSAEDVSRQAQLLVELSKKVINLRELRKIASQGIPDGPGIRSTVWKLLLGYLPPDRALWTSELAKKRSQYKHFKEELLMNPSEISRRLEKAKSYEHDETNRGPLSRSEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDVMRTHPDMHFFSGDSSLAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLETLLRICCSMLILIRRRLLAGDFTANLKLLQHYPPANISHLLYVANKLRKQPSI 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 418096 422887 + Carg10160-RA Car17g00072 164444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00072 444 Gene3D - 90 145 - -
Car17g00072 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 100 345 IPR035969 -
Car17g00072 444 Gene3D - 322 443 - -
Car17g00072 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 323 440 IPR035969 -
Car17g00072 444 Pfam Rab-GTPase-TBC domain 126 408 IPR000195 -
Car17g00072 444 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 441 - -
Car17g00072 444 MobiDBLite consensus disorder prediction 176 200 - -
Car17g00072 444 MobiDBLite consensus disorder prediction 1 92 - -
Car17g00072 444 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 200 314 - -
Car17g00072 444 MobiDBLite consensus disorder prediction 69 92 - -
Car17g00072 444 SMART tbc_4 116 412 IPR000195 -
Car17g00072 444 MobiDBLite consensus disorder prediction 39 53 - -
Car17g00072 444 ProSiteProfiles TBC/rab GAP domain profile. 121 386 IPR000195 -
Car17g00072 444 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00072 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 815.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01440 Car17g00072 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01440 Car-Chr6:10239775 Car17g00072 Car-Chr17:418096 3.19E-31 dispersed
Car12g00865 Car-Chr12:8434063 Car17g00072 Car-Chr17:418096 4.00E-09 dispersed
Car14g01255 Car-Chr14:10820203 Car17g00072 Car-Chr17:418096 1.29E-33 dispersed
Car17g00072 Car-Chr17:418096 Car05g01194 Car-Chr5:11311290 2.16E-13 dispersed
Car17g00072 Car-Chr17:418096 Car08g00886 Car-Chr8:5945020 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00072 Car_Chr17 FPKM 1.760573 1.776877 3.757788 3.913973 4.284803 6.154576 5.758182 2.172823 2.127872 3.096607