Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00074 ATGGCGGACGTCTTAGGCGACGCCGGTGGCGGCGGAACCAAGGCCACAAAGCTTCCGATTCCAGGAAAGAGGAATATACTCATTACCAGCGCTCTTCCATACGTCAATAACGTTCCTCACCTCGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGGTACTGTCGTCTTAGAGGTTATAACGCTATTTATATATGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGTTCTCCTAAAGAGATTTGTGACAAGTACCACAAAATTCACAAAGAAGTTTACGATTGGTTTGGTATTAGTTTTGATGAATTTGGTCGCACATCATCATCACAGCAGACTGAAGTTTGTCAAGAAATATTTGGAAAACTATTGGAGAACAATTGGCTTTCTGAGAACACGATGCTACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCATCTGTCCTACTCCAGGTTGTGAGTATGACTCTGCACGTGGTGATCAATGTGAAAAGTGCGGGAAACTTCTTAATCCAACGGAGTTGAAAGATCCCAGGTGCAAGGTCTGTCAAACATCCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGATAAACTTGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACAAGCTTGGCTTAAAGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGACAAGGTCTTCTATGTTTGGTTTGATGCACCAATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAGAATGTGGAGCTCTTTCAATTCATGGGCAAGGATAATGTTCCTTTCCACACTGTTATGTTTCCTTCTACACTGCTCGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATACTTAAACTATGAAGCAGGAAAATTTTCCAAGAGTAAGGGCATTGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTTCTGCAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTTACATGGGCTGATTTACAAGCAAAACTCAATGGCGAGTTGTTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCAAAACCTTTAGGGCAGGGTTATGGTTCCATAATTCCTGATGCACCTAACGCGGACTCTCATGGATTAACATTGGGTTTGGCTGAAAAAGTTGGTAAATACGTAGACCAATATGTGGAATCAATGGAGAAGGTTAAACTAAAACAAGGTCTAAAAGCTGCAATGGCTATTTCAAGCGAGGGAAATACATATTTGCAAACATCCCAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCGTGCAATATTGTTATGAGAACTTCAACTGGACTTGTGCATCTTCTGGCATGTTTATTAGAACCTTTCATGCCTTCTTTCTCAGATGAGGTGTTTAGGCAGCTGGATTTACCTCTGGAACGGCGTATTTCGCTTTGTGAAGAGAAAGGGGACATCGAGAGAGCAAAGCAACCTTGGAAGACTCTACCTTCTGGTCATAAGATTGGCACACCACAACCTTTATTCAAAGAATTGAACGACGAAGAAGTAGAACTATACAGAGACAAGTTTGCCGGAAGTCAGGCTCAACGCATTGTTAAAGCGGAAGCAGAAAAGCTTGCTGCTCACCTAAAAAAAACTAACGTTTCAGGCAGTGAAAAAAAGCAACAGGCAAAATCCTCTTCAGGCCGCAAACCGAAAGCTGCTGCTGGTGGTGGTGCGGTGGAAGCAGGAATTACGATAACAAGACTGGATATACGAGTAGGATTAATTACTAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGGAAGAAATCGATGTGGGAGAAGCGCAGCCTCGAACCGTTGTCAGTGGACTGGTCAACTACATACCTCTTCAAGAGATGCAGGTTTCCCTTGTTCTCTTCTTTACTTACATTGTTGTAATGAATAATATAATTAATGATCATTTTCTGCTGGTAAAGAACCGGAAGGTCTGTGTTCTTTGCAACTTGAAGCCGGCTTCCATGAGGGGAATTAAATCGCAAGCCATGGTTCTGGCTGCTTCCAATAGCGACCACACCAAGGTTGAATTAGTCGAGCCACCCAAAGACGCCAATGTCGGAGAAAGAATAAAATTCCCAGGATTCGAAGGCGAGCCCGAGGACGTACTAAACCCGAAGAAAAAGGTATGGGAGACGCTGCAAGTGGATTTGGCTATCAACACAGAGGGGGTGGCATGTTTTAAAGATATACCATTTAACACGTCGGCTGGCATTTGCAAAGTTCCTTCCATTACCAGTGGCTCTATCTGGTAG 2508 42.98 MADVLGDAGGGGTKATKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHKIHKEVYDWFGISFDEFGRTSSSQQTEVCQEIFGKLLENNWLSENTMLQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQTSPRIRDTNHMFLELPLLRDKLEEYINKMSVAGSWSQNAIQATQAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNISAEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGQGYGSIIPDAPNADSHGLTLGLAEKVGKYVDQYVESMEKVKLKQGLKAAMAISSEGNTYLQTSQFWNLYKADKPSCNIVMRTSTGLVHLLACLLEPFMPSFSDEVFRQLDLPLERRISLCEEKGDIERAKQPWKTLPSGHKIGTPQPLFKELNDEEVELYRDKFAGSQAQRIVKAEAEKLAAHLKKTNVSGSEKKQQAKSSSGRKPKAAAGGGAVEAGITITRLDIRVGLITKAQKHPDADSLYVEEIDVGEAQPRTVVSGLVNYIPLQEMQVSLVLFFTYIVVMNNIINDHFLLVKNRKVCVLCNLKPASMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGEPEDVLNPKKKVWETLQVDLAINTEGVACFKDIPFNTSAGICKVPSITSGSIW 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 428592 436840 - Carg10158-RA Car17g00074 164446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00074 835 Pfam tRNA synthetases class I (M) 26 420 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car17g00074 835 ProSiteProfiles tRNA-binding domain profile. 648 776 IPR002547 GO:0000049
Car17g00074 835 Pfam Putative tRNA binding domain 725 773 IPR002547 GO:0000049
Car17g00074 835 Pfam Putative tRNA binding domain 654 703 IPR002547 GO:0000049
Car17g00074 835 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car17g00074 835 Hamap Methionine--tRNA ligase [metG]. 24 591 IPR023458 GO:0004825
Car17g00074 835 Pfam Anticodon binding domain of methionyl tRNA ligase 450 596 IPR041872 -
Car17g00074 835 MobiDBLite consensus disorder prediction 612 639 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00074 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1434.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00095 Car-Chr4:533047 Car17g00074 Car-Chr17:428592 4.56E-43 dispersed
Car04g02533 Car-Chr4:20071294 Car17g00074 Car-Chr17:428592 9.79E-46 dispersed
Car07g01320 Car-Chr7:8245157 Car17g00074 Car-Chr17:428592 3.37E-34 dispersed
Car17g00074 Car-Chr17:428592 Car08g00885 Car-Chr8:5936309 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48