Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00083 ATGGATCCCGTCAATACTTGGGGCAATACTCCTCTCGTAAACGTTGATCCTGAGATCTTCGATTTGATCGAGAAGGAGAAGCGTCGCCAATGCCGCGGAATCGAGCTCATTGCTTCTGAGAATTTCACCTCCTTCGCCGTCATCGAGGCCCTCGGAAGTGCCTTGACCAACAAATACTCCGAGGGCATGCCGGGGAACCGATACTACGGTGGAAACGAGTTCATCGATGAGATCGAGAATCTCTGCCGTTCTCGAGCTCTCGAGGCTTTCCATGTCGATCCGGCCAAATGGGGCGTTAATGTCCAGCCCTACTCTGGTTCTCCGGCGAATTTCGCCGCCTACACCGCGTTGCTTCAGCCGCATGACCGGATAATGGGGCTAGATCTTCCTTCTGGTGGTCATTTGACGCATGGTTACTACACCTCCGGAGGGAAAAAGATCTCCGCTACCTCGATTTACTTCGAGAGTTTGCCTTACAAGGTTGATTCCGCCACTGGATTTATTGATTACGATAAGTTGGAGGAGAAGGCTTTGGATTTCAGGCCGAAGTTGATTATCTGTGGTGGCAGTGCGTACCCGAGGGACTGGGATTATGCCAGATTCAGGGAAATTGCTGATAAATGCGGTGCCCTTCTTCTCTGTGATATGGCTCACATTAGTGGTCTCGTTGCTGCTCAGGAAGCTGCGAACCCGTTCGAGTACTGTGACGTTGTGACGACCACGACTCACAAGAGTTTGAGGGGTCCTAGGGCTGGTATGATCTTCTATAGGAAGGGTCCAAAGCCCCCTAAGAAGGGTCAGCCCGAGAATGCTGTCTATGACTTTGAAGACAAGATCAACTTCTCTGTCTTCCCAGCCCTTCAGGGTGGCCCTCACAATCATCAAATTGGCGCTTTAGCTGTTGCCTTGAAGCAGGCTATGTCCCCTGGGTTCAAGGTCTATGCGAAACAAGTTAAGGCCAATGCCGTGGCCCTCGGAAATTACCTGATGAACAAGGGCTACAAGCTTGTCACCGGAGGAACCGAGAACCATCTCGTTCTCTGGGATCTTCGTCCATTGGGATTGACCGGCAACAAGGTCGAGAAGCTTTGCGACTTGTGCAACATCACTGTAAACAAAAACGCCGTGTTTGGCGACAGCAGCGCACTGGCTCCTGGAGGTGTTAGAATCGGTGCACCGGCCATGACTTCTCGAGGTTTGGTCGAGAAAGACTTCGAACAGATCGCTGAGTTCCTGCACCGTGCTGTAACCATCACCTTGAATGTCCAGAAGGAACATGGAAAGCTGTTGAAGGACTTCAACAAGGGTCTGGTAAACAACAAGGAAATCGAAGCGCTGAAGGCGGACGTTGAGAAATTTTCTGGCTCGTTCGAGATGCCCGGTTTTCTCATGTCTGAGATGAAGTACAAGGACTAG 1416 51.2 MDPVNTWGNTPLVNVDPEIFDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALEAFHVDPAKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVDSATGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFREIADKCGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFSVFPALQGGPHNHQIGALAVALKQAMSPGFKVYAKQVKANAVALGNYLMNKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIAEFLHRAVTITLNVQKEHGKLLKDFNKGLVNNKEIEALKADVEKFSGSFEMPGFLMSEMKYKD 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 480322 482739 - Carg10149-RA Car17g00083 164455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00083 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Car17g00083 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Car17g00083 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00083 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - csv:101215910 924.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00346 Car-Chr16:2138059 Car17g00083 Car-Chr17:480322 0 dispersed
Car16g00440 Car-Chr16:2741750 Car17g00083 Car-Chr17:480322 0 dispersed
Car17g00083 Car-Chr17:480322 Car08g00874 Car-Chr8:5858069 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g913 Blo01g00337 Blo12g00102 Bda03g01142 Bda08g00042 Bpe04g01084 . . Bma05g01299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00570 . . . . . . . . . . . . . . . Car17g00083 . . . . . . . . . . . . . . . . . . . Cme05g00731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00083 Car_Chr17 FPKM 12.778788 14.625102 10.048947 10.860072 10.185383 8.788458 9.972541 13.338718 14.074131 11.461672