Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00085 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATACCATACCCACCACCGCAGACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAGAAGCTCCATTCTGTCATGGGAACCAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAAGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAAAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCATCAACGGCCACCAATGCGTCTTTCGTTCTGAGGAATGCAGCGTCGATTCCTACCCAAGGGACGGCCTCTATGTTGCCACCATCAGATAATCAGGCGGCGTCCCAGCCGCCACGGAGTACTGCAACTGAACTTCCAGCAGTTGCTCCGGGTTCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACTGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTGCTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCATCGCCGTCGGAAGAAATCTGAGATAAGGCGAAGGGATCCCGGTCATCCGAAGCCAAATAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCTTTACAGCAGCGTCTTCCCGAGCCAGACCTGAACATGGTCTATGCTGACAAGAACGAAGAAACGGAGGATGGCGACTCTCCACAAACCCCAGATAACGATACAAGCTATGTTGAAGGCAACTCTGGAGAGTATAAAATGGAAGTGAAGGAGGAGGACGAAGAGGAGGAAGAGGAGGACTCGGAAGAAGATGCATCTCCGAAAGGAATTGTTATTGTGGAGGATGTTAATGCTTTAGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGGGACGATAAAGAAGTTTACGCTGGGGAGTCGGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1326 47.06 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRNAASIPTQGTASMLPPSDNQAASQPPRSTATELPAVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQAPSEQPAQPVGVFAKDGTPNAHQHRRRKKSEIRRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEDGDSPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEDSEEDASPKGIVIVEDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 496148 499200 + Carg10147-RA Car17g00085 164457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00085 441 MobiDBLite consensus disorder prediction 326 415 - -
Car17g00085 441 Pfam HMG (high mobility group) box 229 296 IPR009071 -
Car17g00085 441 Coils Coil 278 298 - -
Car17g00085 441 Pfam ARID/BRIGHT DNA binding domain 41 112 IPR001606 GO:0003677
Car17g00085 441 MobiDBLite consensus disorder prediction 388 415 - -
Car17g00085 441 MobiDBLite consensus disorder prediction 197 236 - -
Car17g00085 441 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Car17g00085 441 MobiDBLite consensus disorder prediction 119 147 - -
Car17g00085 441 MobiDBLite consensus disorder prediction 119 151 - -
Car17g00085 441 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 229 296 IPR009071 -
Car17g00085 441 MobiDBLite consensus disorder prediction 358 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00085 - - - bhj:120068345 709.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01565 Car-Chr1:13029978 Car17g00085 Car-Chr17:496148 2.04E-80 dispersed
Car08g00902 Car-Chr8:6042778 Car17g00085 Car-Chr17:496148 0 dispersed
Car14g00543 Car-Chr14:2986771 Car17g00085 Car-Chr17:496148 8.88E-10 dispersed
Car17g00085 Car-Chr17:496148 Car09g00069 Car-Chr9:345113 1.15E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00085 . 1 326 ARID Transcription Factor Family AT1G04880 53.0 9.5e-94 341.3
Car08g00902 . 45 344 ARID Transcription Factor Family AT1G04880 52.0 7.8e-80 295.0
Car16g01214 . 163 432 ARID Transcription Factor Family AT1G20910 59.6 1.5e-87 320.5
Car06g00146 . 206 483 ARID Transcription Factor Family AT1G20910 54.2 4.6e-76 282.3
Car09g00069 CCT 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.1e-113 407.1
Car01g01565 CCT 16 326 ARID Transcription Factor Family AT1G76110 63.9 2.4e-110 396.0
Car16g01214 . 154 462 ARID Transcription Factor Family AT1G76510 61.0 4.7e-106 382.1
Car06g00146 . 197 513 ARID Transcription Factor Family AT1G76510 56.8 1.3e-95 347.4
Car01g01610 . 5 218 ARID Transcription Factor Family AT1G76510 51.5 3.1e-73 273.1
Car14g01069 CCT,ECH 1 781 ARID Transcription Factor Family AT3G43240 58.3 6.3e-260 894.0
Car01g00013 . 1 778 ARID Transcription Factor Family AT3G43240 58.7 1.0e-257 886.7
Car17g00618 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.7 4.0e-254 874.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5017 PF01388 ARID 1.20E-13 CL0123 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00085 Car_Chr17 FPKM 12.105499 14.252259 37.093361 41.432873 13.594874 12.384657 11.258794 13.793607 13.837472 11.759793