Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00085 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATACCATACCCACCACCGCAGACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAGAAGCTCCATTCTGTCATGGGAACCAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAAGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAAAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCATCAACGGCCACCAATGCGTCTTTCGTTCTGAGGAATGCAGCGTCGATTCCTACCCAAGGGACGGCCTCTATGTTGCCACCATCAGATAATCAGGCGGCGTCCCAGCCGCCACGGAGTACTGCAACTGAACTTCCAGCAGTTGCTCCGGGTTCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACTGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTGCTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCATCGCCGTCGGAAGAAATCTGAGATAAGGCGAAGGGATCCCGGTCATCCGAAGCCAAATAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCTTTACAGCAGCGTCTTCCCGAGCCAGACCTGAACATGGTCTATGCTGACAAGAACGAAGAAACGGAGGATGGCGACTCTCCACAAACCCCAGATAACGATACAAGCTATGTTGAAGGCAACTCTGGAGAGTATAAAATGGAAGTGAAGGAGGAGGACGAAGAGGAGGAAGAGGAGGACTCGGAAGAAGATGCATCTCCGAAAGGAATTGTTATTGTGGAGGATGTTAATGCTTTAGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGGGACGATAAAGAAGTTTACGCTGGGGAGTCGGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1326 47.06 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRNAASIPTQGTASMLPPSDNQAASQPPRSTATELPAVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQAPSEQPAQPVGVFAKDGTPNAHQHRRRKKSEIRRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEDGDSPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEDSEEDASPKGIVIVEDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 496148 499200 + Carg10147-RA Car17g00085 164457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00085 441 MobiDBLite consensus disorder prediction 326 415 - -
Car17g00085 441 Pfam HMG (high mobility group) box 229 296 IPR009071 -
Car17g00085 441 Coils Coil 278 298 - -
Car17g00085 441 Pfam ARID/BRIGHT DNA binding domain 41 112 IPR001606 GO:0003677
Car17g00085 441 MobiDBLite consensus disorder prediction 388 415 - -
Car17g00085 441 MobiDBLite consensus disorder prediction 197 236 - -
Car17g00085 441 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Car17g00085 441 MobiDBLite consensus disorder prediction 119 147 - -
Car17g00085 441 MobiDBLite consensus disorder prediction 119 151 - -
Car17g00085 441 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 229 296 IPR009071 -
Car17g00085 441 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01565 Car-Chr1:13029978 Car17g00085 Car-Chr17:496148 2.04E-80 dispersed
Car08g00902 Car-Chr8:6042778 Car17g00085 Car-Chr17:496148 0 dispersed
Car14g00543 Car-Chr14:2986771 Car17g00085 Car-Chr17:496148 8.88E-10 dispersed
Car17g00085 Car-Chr17:496148 Car09g00069 Car-Chr9:345113 1.15E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5017 PF01388 ARID 1.20E-13 CL0123 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00085 - - bhj:120068345 709.909