Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00088 ATGGGTCGCTTCCCATTTGCCGTTCTCTTTCTCTCTTCATTGTTTGTTTTGAGGTTTTGTTCCGTTCATGGAAGAATTCCGACCACCGTAGAAGGGCCGTTTAAGCCTGTAACTGTTCCGCTTGATACGAGTTTCCGGGGGAAGGCCGAGGACTTGCCGGAAACTGATCCGAGAGTTCAGAAGAATGGGGGCCAATTTGTGCCGGAGCAGATTTCTGTTGCTCTCTCTGCGGATTATGACTCTGTTTGGATTTCTTGGATCACAGGATTGGAGCCTGATACTTTGTACCAATATCAATGTGGAGACCCTTCAGCTGCAGAAGAAATAAGTGATATCCATTATTTCAGGACCATGCCTGTTTCTGGGCCTAAGAGTTATCCTAATAGAATAGCATTGGTTGGTGATCTGGGTCTTACATACAACACTACATCAACAGTTGATCATATTTTGAAGAACCATCCTGATCTTGTGCTATTGATTGGGGATGTGAGTTATGCAAACCTATATCTTACAAATGGCACTGGCTCTGATTGTTACTCTTGTTCGTTTCCTCATACTCCTATTCACGAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTATATGGAGCCTCTAATATCCGAAGTTCCATTAATGGTGGTGGAAGGGAACCACGAGATCGAACCACAAGCTGAAAATCAAACATTTGCAGCTTATAGTTCTCGATTTGCCTTCCCATCCAACGAGAGTAACTCGTCTTCGACATTTTACTACTCTTTCAATGCAGGTGGCATTCATTTTATAATGCTTGGTGCCTACATTTCATATGACAGATCAGGTGACCAATACAAATGGCTAGAACAAGACCTGGCTAAAGTTAACAGGAAAGTTACTCCATGGTTGGTAGCTACATGGCACCCACCATGGTACAGCACCTACACTTCTCATTATAGAGAAGCAGAGTGCATGAGAGTGGCAATGGAAGACTTGCTCTACAAGTATAAAGTTGACTTAGTTTTCAACGGCCATGTTCATGCCTATGAGAGGTCAAATAGAGTATACAACTACACTTTGGATCCTTGCGGTCCGGTCTACATAACGGTAGGTGATGGAGGTAACCGAGAGAAAATGGCAATTGAACATGCTGATGAACCTGGAAACTGTCCAGACCCGTCCTCGACACCGGATGAATACATGGGCGGTTTCTGTGCGTTCAATTTTACGTCAGGCCCAGCTAAAGGGAAATTCTGCTGGGATCAGCAACCTGATTATAGCGCTTATCGTGAAAGTAGCTTCGGCCATGGCATTTTGGAGGTGAAAAACGAAACTCATGCGTTGTGGACATGGCAACGAAACCAGGACTCGTATAGATCTGTCGGGGATATAATATACATCGTACGACAACCAGACGTTTGTCTCAATGAGATGAAGGTACATACATACAGACATGGAAAACAAGAAGATATGTGA 1452 44.08 MGRFPFAVLFLSSLFVLRFCSVHGRIPTTVEGPFKPVTVPLDTSFRGKAEDLPETDPRVQKNGGQFVPEQISVALSADYDSVWISWITGLEPDTLYQYQCGDPSAAEEISDIHYFRTMPVSGPKSYPNRIALVGDLGLTYNTTSTVDHILKNHPDLVLLIGDVSYANLYLTNGTGSDCYSCSFPHTPIHETYQPRWDYWGRYMEPLISEVPLMVVEGNHEIEPQAENQTFAAYSSRFAFPSNESNSSSTFYYSFNAGGIHFIMLGAYISYDRSGDQYKWLEQDLAKVNRKVTPWLVATWHPPWYSTYTSHYREAECMRVAMEDLLYKYKVDLVFNGHVHAYERSNRVYNYTLDPCGPVYITVGDGGNREKMAIEHADEPGNCPDPSSTPDEYMGGFCAFNFTSGPAKGKFCWDQQPDYSAYRESSFGHGILEVKNETHALWTWQRNQDSYRSVGDIIYIVRQPDVCLNEMKVHTYRHGKQEDM 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 514072 517504 - Carg10144-RA Car17g00088 164460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00088 483 Pfam Iron/zinc purple acid phosphatase-like protein C 356 453 IPR025733 -
Car17g00088 483 Pfam Calcineurin-like phosphoesterase 129 341 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00088 K22390 ACP7; acid phosphatase type 7 - csv:101214711 791.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01675 Car-Chr14:13340679 Car17g00088 Car-Chr17:514072 0 dispersed
Car17g00088 Car-Chr17:514072 Car03g01049 Car-Chr3:8582872 6.52E-85 dispersed
Car17g00088 Car-Chr17:514072 Car07g00845 Car-Chr7:4473618 8.51E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g907 . . Bda03g01128 . . . Bma04g01056 . . Cmo17g00102 . . . . . . . . . . . . . . Cla06g00762 Cam06g0811 Cec06g0823 Cco06g0829 Clacu06g0813 Cmu06g0787 Cre06g1565 . . . . . . Chy05g00561 . . . . . . . . . Sed09g0186 . . . Cma17g00099 . Car17g00088 Cpe12g00088 . Bhi12g01497 Tan06g2299 Cmetu05g0011 . Hepe03g0361 . . . . . . . . . Lsi09g01138 . . Cme05g00719
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00088 Car_Chr17 FPKM 136.967499 147.447723 103.114235 106.825684 164.623428 160.770752 148.207336 61.247627 61.636986 57.187691