Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00096 | ATGGGTGGCCACGGAAAGGTCTTTACATTGGCTGAAGTCTCTCAGCACAATACCCGCCAGGACTGTTGGTTGATCATCAATGGCAAGGTTTACAACGTAACCGAGTTCTTGGAAGACCATCCCGGTGGCGACGAGGTGTTGTTGACTGGCACAGGTAAGGATGCAACAGATGATTTCGAAGACGTGGGTCATAGTGAGAGTGCAAGAGAAACGATGAACAAATACTATGTTGGAGACATCGACATCTCGACAATCCCTGAACGTTTGACATACACAGCTTCGAAGCAGCCTCATTATAATCAAGATAAGACGACCGAGTTCATCGTCAAGCTTCTCCAGTTCCTGGTCCCTCTCGCAATCTTGGGTCTGGCAGTTGGTATCCGCTTTTATAGCAAATCAACCTGA | 405 | 47.65 | MGGHGKVFTLAEVSQHNTRQDCWLIINGKVYNVTEFLEDHPGGDEVLLTGTGKDATDDFEDVGHSESARETMNKYYVGDIDISTIPERLTYTASKQPHYNQDKTTEFIVKLLQFLVPLAILGLAVGIRFYSKST | 134 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 556509 | 559563 | + | Carg10136-RA | Car17g00096 | 164468 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00096 | 134 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 36 | 43 | IPR018506 | GO:0020037 | |
| Car17g00096 | 134 | Pfam | Cytochrome b5-like Heme/Steroid binding domain | 9 | 80 | IPR001199 | - | |
| Car17g00096 | 134 | ProSiteProfiles | Cytochrome b5 family, heme-binding domain profile. | 5 | 81 | IPR001199 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car14g01928 | Car-Chr14:14765753 | Car17g00096 | Car-Chr17:556509 | 2.23E-44 | dispersed | |
| Car15g00942 | Car-Chr15:6720301 | Car17g00096 | Car-Chr17:556509 | 4.57E-62 | dispersed | |
| Car14g01692 | Car-Chr14:13456992 | Car17g00096 | Car-Chr17:556509 | 9.55E-76 | wgd | |
| Car17g00096 | Car-Chr17:556509 | Car19g00129 | Car-Chr19:1153633 | 2.63E-62 | wgd | |
| Car17g00096 | Car-Chr17:556509 | Car02g01436 | Car-Chr2:9379656 | 1.57E-63 | wgd | |
| Car17g00096 | Car-Chr17:556509 | Car06g01070 | Car-Chr6:8049560 | 1.48E-74 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00096 | K23490 | - | csv:101213506 | 251.521 |