Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00103 ATGGCGGCACTTAGTAAGTGGTCTTCTCTGTCTCTGTTTGCCCTTGCAATGGTGTTCTTCGTAACAATCGCTGTGATTCGCAAGGGAGAGACGTCTGAAGTTAGGGTGCAGAATGATGATATGGAGGAAGAACTCAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATACTTCTCTTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCAAATTGGCACCGAAACCGTAAACGTCTAGCTGAATGTGGCATCGGGTTCGGTCGGAATGCTATCGGTGGTCGCGACGGTCGTTTCTATGTCGTTACTGATTCGAGTGACCACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGAGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTCAAAACCATTGATGCTCGAGGAGTCAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCCAGCCATATATGGATTGACCACAATTCGCTCTCTAATTGTGCCGATGGACTTATTGATGCCATTATGGGCTCAACCGCTATCACAATCTCCAACAACCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGCAAGGGGCTCATTCAAAGAATGCCAAGGTGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGTAGTGCCAACCCCACCATCAATAGTCAAGGCAACAGATATGCAGCTCCATCCAACCCTTTTGCCAAAGAGGTGACTAAGCGAGTCGAAACGCCGGAGAGCAAATGGAAAGGCTGGAATTGGAGATCAGAAGGAGATATGTTACTAAACGGTGCATATTTCACCCCATCCGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCAAGCTTAGGAGCCAAATCTGCTTCCATGGTAGGCTCCATCACTTCTTCTGCAGGTTCTCTCCCATGCCGCCGAGGCCATCCCTGCTAG 1296 47.45 MAALSKWSSLSLFALAMVFFVTIAVIRKGETSEVRVQNDDMEEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPSNPFAKEVTKRVETPESKWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 607458 611297 + Carg10129-RA Car17g00103 164475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00103 431 PANTHER PECTATE LYASE 37 428 - -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Car17g00103 431 PRINTS Pollen allergen Amb family signature 402 425 IPR018082 -
Car17g00103 431 Gene3D - 82 424 IPR012334 -
Car17g00103 431 PANTHER PECTATE LYASE 18-RELATED 37 428 IPR045032 GO:0030570
Car17g00103 431 Pfam Pectate lyase 169 346 IPR002022 -
Car17g00103 431 SMART amb_all 157 354 IPR002022 -
Car17g00103 431 SUPERFAMILY Pectin lyase-like 59 425 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01087 Car17g00103 CCT
Car14g01674 Car17g00103 CCT
Car06g01087 Car17g00103 ECH
Car14g01674 Car17g00103 ECH
Car08g00910 Car17g00103 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00546 Car-Chr14:2999530 Car17g00103 Car-Chr17:607458 5.55E-166 dispersed
Car17g00103 Car-Chr17:607458 Car18g00198 Car-Chr18:1127035 0 dispersed
Car18g00116 Car-Chr18:623998 Car17g00103 Car-Chr17:607458 7.40E-147 dispersed
Car14g01674 Car-Chr14:13329725 Car17g00103 Car-Chr17:607458 0 wgd
Car17g00103 Car-Chr17:607458 Car19g00112 Car-Chr19:937841 0 wgd
Car17g00103 Car-Chr17:607458 Car02g01451 Car-Chr2:9460031 0 wgd
Car17g00103 Car-Chr17:607458 Car06g01087 Car-Chr6:8171712 0 wgd
Car17g00103 Car-Chr17:607458 Car08g00910 Car-Chr8:6115148 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00103 K01728 - csv:101217580 840.876