Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00105 ATGTCGGTTTGGGGTTGGAAAGTGGTTGGGAGTTTGGTGCTTCTGGGTTTTGTGTTTAACATCTCACATGGGTTGAACTCAGAAGGTCATTTTCTATTAGACTTGAAAAACGCTGTTTCTGATCCGCTTGGTTGGTTAAGCAACTGGAATTGGAGCGACGAAACGCCATGTGAATGGAGTGGTGTAAGGTGTAGTTGTGGTGAGGAAGGAGTGGTTTTGTCCCTTGACTTGAGCTTAAAGAACCTGTCAGGTCCTTTAAGCTCCAGCGTTGGTAGTTTAATCCACTTGACTTATCTCAATCTTTCCTGGAATGAATTCAGTGGAAGAATACCGAAAGAGATTGGAAATTGTATGGAGTTGGAATATCTTGGTTTGAACAACAATAAATTTGATGGTGAAGTTCCATATGAATTGGGACGACTCACTTGTTTGGTTACGTTGAATATATGTAATAATCGAATCCGTGGTTCTTTTCCTGAAGAGATGGGAAACTTGAAATCGTTGTATGAGTTAGTTGCGTATACGAACAATATCACGGGTTCGTTGCCTCGTTCTTTTGGGAATCTGAAGAGGTTGAGAACGTTTAGAGCAGGACAAAACGCGATCTCGGGGAGGTTACCGGGTGAAATAGGTGGGTGTGAGAACTTGGAAATACTTGGGCTTGCTCAAAACCAGTTAGAAGGGGAGTTACCAAAGGAGCTTGGCATGCTTACAAACTTGACTCACTTGATTCTTTGGGAGAATCAGCTTTCTGGCATTCTACCAAAAGAGCTTGGGAATTGTACAAGTTTAACTATGCTTGCTCTGTATGAGAACAATCTTGGTGGACCTATACCCAACGAGTTTGGGAACCTAATCTCTTTGAAGTATTTGTATATATACCGAACCGCATTGAACGGAACTATTCCCAGGGAGATCGGGAACCTTTCTTCGGCAACGGAGATAGACTTCTCCGAGAATTATTTGACCGGTGAGATACCGAAAGAGCTCGGTAACGTAAAACCTCTCCAATTACTTTACCTCTTTCAAAATAAGCTGATTGGTGCTATACCCAATGAACTTAGTAGCTTGACTAACTTGACTAAACTTGATCTTTCAATCAACGCCCTCACCGGCCCTGTTCCGTTCGGGTTTCAGTATATGCCTGCATTGTTTCAGTTGCAGCTTTTCAGCAACAGTTTGAGCGGTACCATTCCGAAAGGACTCGGTCGATATAGCTACCTATCGGATATCGACTTTTCAGACAACTTCTTGACAGGACGAATACCTCCCCATCTATGTCATCGTTCTAACCTCTCCATCTTGAACTTGGACTCCAATAACCTTTATGGAAACATACCTACCGGGATCTTGAACTGCAAACCGTTGACGCAGATTCGTCTCGTTGCTAACCGCTTTACCGGTGGCTTTCCGGTAGAGCTGTGTAACTTGGTGAACCTTACTGCTATTGACTTGGACCACAATAGATTCAGTGGTCCTCTTCCTCCAGAGATTCAAAATTGCCATAAGTTGCAAAGGCTACATATTGCAAATAATTACTTTATGTCTAGTTTGCCGAACGAGATCGGAAACCTCGTACGGTTGGTGACTTTCAATGTTTCGTCAAATCGGTTTACGGGGTCCATTCCACCTGAGATAGTCAACTGTAGGATCCTCCAACGCCTCGATCTCAGCCACAATAGCTTCGAAAACGCTTTGCCAAAGGAGATTGGATCTCTCTTACAGTTGGAGATTCTTAGAGTTTCAGAGAATAAATTTTCTGCAAGTATACCTCAAGAACTCATGAATCTCTCCCATTTGACTGAATTGCAAATGGGTGGCAATTCATTTTCTGGTAGCATTCCTTTTGAGTTGGGGTTCTTGAAAAGCTTACAAATTGCTTTGAATCTTAGTTTCAATATGCTAACTGGTTCAATACCACCAGAGCTTGGAAGTTTGAATCTATTGGAATATCTCCTGCTTAATAACAACCATTTGTCCGGTCAGATACCCATCTCCTTTGCGAATCTTTCCAGTTTAATGAGCTGTAACGTCTCCTACAACCACCTTCACGGGCCAATCCCTTCGATACCCTTGTTTCAGAATATGCCCACCAGTAGCTTCACTGGCAACAAGGGGCTCTGTGGCCAACCTCTTGCCAACTGCAATGGAGATTCATCGTCTCCATCTATTCCATCTTTCGATAGCGTAAATGCACGTCGAGGTAGAATCATAACCGGGATTGCAGCTGCTATAGGCGGAGTTTCTATTCTTCTTATTATGATCATCTTATATTGCATGAGACATCCATCACAAATCGTGCAAAACAAGGAAACACAATCTATGGATTCGGATCTCTATTTCCCACCTAAGGAAGGTTTTACTTTCGAAGATCTAATCGAAGCAACTAATAGTTTTCACGACAGCTGCGTAGTGGGAAAAGGTGCGTGTGGAACTGTATACAAGGCTGTGATGCATTCTGGACAGACGATTGCAGTCAAGAAGTTAGCATCGAACAGGGAAGGGAGCAACATCGATAATAGCTTCCGAGCTGAGATTTCGACACTAGGAAAGATTCGACATCGCAATATCGTTAAACTATACGGTTTTTGCAATCATCAAGGCTCAAATCTTCTTCTTTATGAGTACATGGAAAGGGGTAGTTTGGGTGAGTTGCTTCACGGGACGGCGTGTAACTTGGAATGGCCGACTCGGTTTACAATCGCCATTGGAGCTGCAGAGGGACTTAATTATCTACACCATGGCTGCAAACCGAGGATCGTTCATCGCGATATCAAATCGAATAACATTCTCCTCGATTATAACTTCGAGGCTCATGTTGGTGATTTCGGTTTAGCAAAAGTAATGGACATGCCTCAGTCTAAGTCGATGTCAGCAGTCGCGGGATCGTATGGATACATCGCTCCTGAATATGCATACACCATGAAGGTCACAGAAAAATGTGACATATATAGCTATGGGGTCGTTTTACTAGAACTGCTCACTGGAAGAACTCCGGTACAGCCGATCGATCAGGGAGGTGATCTCGTCACGTGGGTCAAAAACTATATGCGAGACCACTCGATGTCGTATGAAATGCTAGATCAGCGACTGAATCTTCGAGATCAAGGCACGGTCAATCACATGCTGACAGTCCTAAAAATTGCTCTAATGTGCACAAGTTCGTCTCCTTTTCATCGGCCATCGATGCGGGAAGTTGTATCTTTGCTCTTAGAATCGACCGAGCCTGACGACGATCATATTCCAGCTTTAACGTATACTCTAGCCCCAAAGGACGACGCAGCCTCATGA 3291 43.6 MSVWGWKVVGSLVLLGFVFNISHGLNSEGHFLLDLKNAVSDPLGWLSNWNWSDETPCEWSGVRCSCGEEGVVLSLDLSLKNLSGPLSSSVGSLIHLTYLNLSWNEFSGRIPKEIGNCMELEYLGLNNNKFDGEVPYELGRLTCLVTLNICNNRIRGSFPEEMGNLKSLYELVAYTNNITGSLPRSFGNLKRLRTFRAGQNAISGRLPGEIGGCENLEILGLAQNQLEGELPKELGMLTNLTHLILWENQLSGILPKELGNCTSLTMLALYENNLGGPIPNEFGNLISLKYLYIYRTALNGTIPREIGNLSSATEIDFSENYLTGEIPKELGNVKPLQLLYLFQNKLIGAIPNELSSLTNLTKLDLSINALTGPVPFGFQYMPALFQLQLFSNSLSGTIPKGLGRYSYLSDIDFSDNFLTGRIPPHLCHRSNLSILNLDSNNLYGNIPTGILNCKPLTQIRLVANRFTGGFPVELCNLVNLTAIDLDHNRFSGPLPPEIQNCHKLQRLHIANNYFMSSLPNEIGNLVRLVTFNVSSNRFTGSIPPEIVNCRILQRLDLSHNSFENALPKEIGSLLQLEILRVSENKFSASIPQELMNLSHLTELQMGGNSFSGSIPFELGFLKSLQIALNLSFNMLTGSIPPELGSLNLLEYLLLNNNHLSGQIPISFANLSSLMSCNVSYNHLHGPIPSIPLFQNMPTSSFTGNKGLCGQPLANCNGDSSSPSIPSFDSVNARRGRIITGIAAAIGGVSILLIMIILYCMRHPSQIVQNKETQSMDSDLYFPPKEGFTFEDLIEATNSFHDSCVVGKGACGTVYKAVMHSGQTIAVKKLASNREGSNIDNSFRAEISTLGKIRHRNIVKLYGFCNHQGSNLLLYEYMERGSLGELLHGTACNLEWPTRFTIAIGAAEGLNYLHHGCKPRIVHRDIKSNNILLDYNFEAHVGDFGLAKVMDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPIDQGGDLVTWVKNYMRDHSMSYEMLDQRLNLRDQGTVNHMLTVLKIALMCTSSSPFHRPSMREVVSLLLESTEPDDDHIPALTYTLAPKDDAAS 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 653769 657283 - Carg10127-RA Car17g00105 164477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00105 1096 ProSiteProfiles Protein kinase domain profile. 799 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00105 1096 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515
Car17g00105 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Car17g00105 1096 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Car17g00105 1096 Pfam Protein kinase domain 800 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00644 Car-Chr3:5823284 Car17g00105 Car-Chr17:653769 5.38E-170 dispersed
Car06g00185 Car-Chr6:1115637 Car17g00105 Car-Chr17:653769 9.18E-19 dispersed
Car06g01091 Car-Chr6:8200827 Car17g00105 Car-Chr17:653769 0 dispersed
Car07g00388 Car-Chr7:1963440 Car17g00105 Car-Chr17:653769 5.62E-169 dispersed
Car08g00914 Car-Chr8:6145582 Car17g00105 Car-Chr17:653769 3.23E-40 dispersed
Car11g01189 Car-Chr11:9643782 Car17g00105 Car-Chr17:653769 1.47E-12 dispersed
Car14g01670 Car-Chr14:13300897 Car17g00105 Car-Chr17:653769 0 dispersed
Car15g00758 Car-Chr15:4281191 Car17g00105 Car-Chr17:653769 1.64E-139 dispersed
Car16g00174 Car-Chr16:972234 Car17g00105 Car-Chr17:653769 3.80E-65 dispersed
Car17g00105 Car-Chr17:653769 Car11g00076 Car-Chr11:405604 0 dispersed
Car18g01139 Car-Chr18:11318917 Car17g00105 Car-Chr17:653769 2.87E-35 dispersed
Car17g00104 Car-Chr17:620658 Car17g00105 Car-Chr17:653769 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89461 PF00069 Pkinase 1.10E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00105 - - cmax:111499098 2034.22