Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00138 ATGAAGTCTTCGACTAGGCTTGATTCGGCTACTTTTCAGCTCACACCTACTCGAACCAGTTCTGATGAACTTCTTTGCTTCAAGCGATCTGCTATGCCGCGCTCGGCTTTAGAAGCCAATTCACGGTGTGATTTGATTCTATCTGCAAATGGAAAGTCTGAGAAGATAGCTTCGGGTTTGTTGAATCCTTTTCTTGCCCATTTGAAGACTGCACAAGAACAGATGGCCAGAGGTGGTTATTCCATTATTCTTGAGCCAGACCCTCGCAGTGATAGAACATGGTTCACAAAGGGTACCATGGAGAGGTTTGTCCGATTTGTAAGCACCCCTGAAATCTTGGAACGGGTGTACACTATTGAATCAGAGATCTTACAAATTGAGGAGGCAATCGTGATTCAGGGCAACAGTGACATGGGACCAAATGTTGTAGATGACAAGCAAGGAAAGCCTACAAAGCCTACCGAAAGCGCCACCGAAGCAAGCAAGCCTCTTCTGGATGGTAACGAGGAAAAAGCCATTGTTCTATACAAGCCTGATGCAAAATCATTGGAGGCCAATGGACATATGATGTCAGAGGAGAACTCAAAAGCCCAGCTTCTTAAAGTCTTGGAGACACGCAAAACTATGCTGCAAAAGGAGCAAGGAATGGCTTTTGCTCGAGCTGTTGCTGCTGGTTTTGACATTGATCGGTTGTCACCCTTGATATCATTTGCCAACAGATTTGGAGCCTCACGATTGATGGATGCATGCATAAAATTCAAAGAACTGTGGAAAAGAAAGCATGAAAGTGGCCAATGGCTCGAAATTGAAGCAGCAGAAGCACTGTCCAGCCGAGCAGACTTTTCCCCTTCCATGAATGCATCAGGCATTATACTTACAAGTATGACTGACAAGCAGACAGAGTCTAGAGAAGCATTGTCTGAATCTCAAAGCGAACCATCTCCGACAAATAAGGGGAATGCAAGTGCAGATGGAAATACACGGACACCTATGATGTACCAGTCACCACCAGGCCACCAGGAGTATCTTCAAGGGCAGTATCCTCATCATGTCTACCCTCCCTGGCCCATCAATTCTCCTCCAGGTGCATTACCTATCTTTCAAGGATACCCCATGCAAGGAATTCCTTACTATCAGAACTATGCAGGGAGTAGCCCATTCTTTCATCCACATTATCCAGTAACAGAGGATTCTCGCCCGGGTGATGGTAAAAAAATGGGAGGCAAAAGGCACTCCATGGATAGTGGAGATAACTCGATGGAACCAGAGGCCTGGGAGTCGAATGCTTCAGAAACAAGAACACCAGATGATGCAGAATCAGAGCAAGAAGCTTCAGAAGATCTAAGAAAAGCTGGTCGATCAGGTAAAAAGAAGTCGAGTGTGGTTGTCATCCGCAACATCAACTACATTGCATCGAAGAGGTACAACTCATCAGGCAGTGAAACAGATTCACGGTCTGATAGTGAAAGTGGTGAAGATGGAGATTCACAGGCTATTAGTCCGGAACTTAAACACAAGAAATCACCTAGATCGTCAAGGAGCAAAGGAAAACATCTAAATTTTGGAGATCAATCAAATACTTCTGCAAAAACTGTTTCACCAGAAGCAGATGGACATTGGCAGGCATTCCAAAGCCTTTTACTTCGGGATGCTGATGGGGATAAACATCATGCTGATCAAAGCCTGTTTACCTTGGAAAGGGAGACGAAGCAGAAAAGGCAACAAAATAAAGTTGGTGATGATCCATTGATTGCTCAAGGATGGAACAAAAATGAAATCCGAGAAAATGGTGCTACAGACATTGATCGAGTTGGTGGAAGAATCAACCGCATGTCAAGAGCACCAAATGATGAATTATTAACTTCCAGAAGAGATAGTCTATCTGGAGATGGTCATTTGAACGTGCAGGCTACAGAACTAGATGGAGGAAGAAATGGCTACAGGAGGCCTGGTAGTGATGATTTTATAGTTTATGGACAAAAAGGTCAAACTCATTCTAACGCTTACTCGGATCCATTAGCTGCAGGTGGCTTTGATAATACAAAAATGAGTTATGATAAAAGTTCTTCAAATAATTTAGATGGTGATTCTTACATAGTTACATTAAGATCGACATCAATGGATGCAGTAGGAAAGGAAGGTACAAGTGCTGTTGACATGGATTCTGAGTTTCCATCTTCAAATCGTAAGGCAGAAAACTTGTCCAATAGAGTTGCTGACTACGAGCCAGATGTACTGAATCTGGTGCCAAAGCGTGAAACAGAAGACGAACCTGCTGGCGGCTATGATCCTGCTTCAGAATATGAAATGCAAGTCCACGCTGGACGTGTACAAGCTGTGAATAAAAAGAAGGAAATGGTGACTGATGTTAAACAAGGGACTATTAGGTTGGACAATGATCGAAAGCCAAAAGTTACTCCTGACAGAAAAACTGGGGGGCCAATAAGGAAGGGAAAACCATCTAAGTTGAGTCCTTTAGATGAAGCACGAGCACGTGCTGAAAAGCTAAGAAGTTATAAAGCTGATCTCCAGAAATTGAAGAAGGAGAAGGAGGAGGAGGCAATAAAAAGAATAGAAACTTTAAAGCTAGAGAGGCAAAAGAGAATTGCAGCAAGGGGTAACAACAGCAATACTGCTGCTCAGTCATCATTGCCCTCTCAACAAACTAGAAAGCTCCTGCCAACAAAAATGTCACCGAGCTCTCAGAAAGGGTCAAAATTTAGTGATTCAGATCCAGGACCATCATCTCCTCTGCAAAGGTTCTCCATCAGAACGGCTTCAATTGGTTCCAATGATTCCAACAGTGCTGCAAAACCCAGCAGATTGAATGGTATAAATCACTCAGCTGGAAACCGGTTAAGTCAATCTGTACCTTCATTAAATAAACTAAAGAAAGAGAACAGTGAGGCTACACATGATAAAAAAGTATCCATGGCTCGAATTAGAAGATTATCAGAGCCAAAAATGAGTATCAGCAATCATTCTTCTTCTTTCAAGACGCGGAGCACTGAGCCAGCTTTGAAGGCAAAACTAACAAATGAGACTGAGAGCAAAAAGAAGATATCTAATGAGACTGACAGCAAAAAGAAGGTATCTAACGAGACTGATAGCAAAAGGAAGATATCTAATGAGACTGACAGCAAAAAGAAGGTATCTAATGAGACTGATAGCAAAAAGAAGATATCTGCTATAATGAATTTGGATAAGAGCAAGGCTGCAACTCTTCCGGAACTTAAAATTAGAACGCCCAAGGGACCTGGTGCTACAATTGGCAACTCATTAGCAAAAGAAATGACGCAGAGCGTTAATTGTTCTTCAGTTTCTGATGTTGCTTGTGCTTCGATGGAAAAAATCACTGCCAAAGTCTCACATCATAATGAACTGGATGACAACCCTGTTGTTGAGAAGACTGTTGTAATGCTTGAATGTGAGAAGCCCTCCATCCGTACAGGTCCTGCTTCTCAAGACAATCTTTGCGACCGAAGGACATATAGCAAGCACAAAATGGAGGGAAAAACTGATATCCCATCAGAATATTCTGCCACCAATGCTCTTAATCCCCAAATTAAAGTGTCCGGTGTTAATAGAGAACCCATCAAGCGCCAATCACAGGGTCAGTTGAGTTCTCGTGAGGTGACGGTGAATGGTGCAGATCAGGAAGCACAAAACTTCTCATCTCCTACTACGACCGAAAAATTGTATAAAGCTCCACATGCTCGAGTTTCGTCTTTTGAAGATCCTTCCACACGCATTTCGGAGCATGGAAAAGCAACCCCATCAAATTTGGAGAGTGCAGCATCAGGCACTGTAACGGCTAAAGCTTATGTTCCTGATCATGGAAACGCACTATTGGAAAAGATTCCTGAAGCATTAGAGAAACCCGAGGCAAAAAAATCATCTAAAGGACTTAGATTGTTTCTGAAGTTTGGAAGAAAGAATCAAAGCCCAGCTATAGATGAGCATAATGATGAATCAGATAATACCAGCGCAACTGGTTCCGAAGCCAATGATGTTGGGATAAATACCACTCCGCACAATGAAGCAGTTCCTACATTGAAAAATCTGATTTCTCAAGACGAAACCCCCACTGCCAGCAAAACTCAGAAGTCTTCTCGTGCATTTTCCCTGCTATCACCTTTCCGAAGCAAGAACAGTGAAAAGAGAACTGCATAA 4173 42.8 MKSSTRLDSATFQLTPTRTSSDELLCFKRSAMPRSALEANSRCDLILSANGKSEKIASGLLNPFLAHLKTAQEQMARGGYSIILEPDPRSDRTWFTKGTMERFVRFVSTPEILERVYTIESEILQIEEAIVIQGNSDMGPNVVDDKQGKPTKPTESATEASKPLLDGNEEKAIVLYKPDAKSLEANGHMMSEENSKAQLLKVLETRKTMLQKEQGMAFARAVAAGFDIDRLSPLISFANRFGASRLMDACIKFKELWKRKHESGQWLEIEAAEALSSRADFSPSMNASGIILTSMTDKQTESREALSESQSEPSPTNKGNASADGNTRTPMMYQSPPGHQEYLQGQYPHHVYPPWPINSPPGALPIFQGYPMQGIPYYQNYAGSSPFFHPHYPVTEDSRPGDGKKMGGKRHSMDSGDNSMEPEAWESNASETRTPDDAESEQEASEDLRKAGRSGKKKSSVVVIRNINYIASKRYNSSGSETDSRSDSESGEDGDSQAISPELKHKKSPRSSRSKGKHLNFGDQSNTSAKTVSPEADGHWQAFQSLLLRDADGDKHHADQSLFTLERETKQKRQQNKVGDDPLIAQGWNKNEIRENGATDIDRVGGRINRMSRAPNDELLTSRRDSLSGDGHLNVQATELDGGRNGYRRPGSDDFIVYGQKGQTHSNAYSDPLAAGGFDNTKMSYDKSSSNNLDGDSYIVTLRSTSMDAVGKEGTSAVDMDSEFPSSNRKAENLSNRVADYEPDVLNLVPKRETEDEPAGGYDPASEYEMQVHAGRVQAVNKKKEMVTDVKQGTIRLDNDRKPKVTPDRKTGGPIRKGKPSKLSPLDEARARAEKLRSYKADLQKLKKEKEEEAIKRIETLKLERQKRIAARGNNSNTAAQSSLPSQQTRKLLPTKMSPSSQKGSKFSDSDPGPSSPLQRFSIRTASIGSNDSNSAAKPSRLNGINHSAGNRLSQSVPSLNKLKKENSEATHDKKVSMARIRRLSEPKMSISNHSSSFKTRSTEPALKAKLTNETESKKKISNETDSKKKVSNETDSKRKISNETDSKKKVSNETDSKKKISAIMNLDKSKAATLPELKIRTPKGPGATIGNSLAKEMTQSVNCSSVSDVACASMEKITAKVSHHNELDDNPVVEKTVVMLECEKPSIRTGPASQDNLCDRRTYSKHKMEGKTDIPSEYSATNALNPQIKVSGVNREPIKRQSQGQLSSREVTVNGADQEAQNFSSPTTTEKLYKAPHARVSSFEDPSTRISEHGKATPSNLESAASGTVTAKAYVPDHGNALLEKIPEALEKPEAKKSSKGLRLFLKFGRKNQSPAIDEHNDESDNTSATGSEANDVGINTTPHNEAVPTLKNLISQDETPTASKTQKSSRAFSLLSPFRSKNSEKRTA 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 839079 846685 - Carg10094-RA Car17g00138 164510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00138 1390 MobiDBLite consensus disorder prediction 1197 1232 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 1328 1384 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 518 534 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 621 648 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 859 1057 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 559 577 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 1011 1057 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 783 831 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 430 454 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 870 964 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 389 459 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 395 417 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 295 334 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 988 1010 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 1311 1390 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 472 537 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 559 591 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 965 982 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 485 507 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 1195 1265 - -
Car17g00138 1390 Coils Coil 826 856 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 295 345 - -
Car17g00138 1390 MobiDBLite consensus disorder prediction 137 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00138 - - - cmax:111499086 2554.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00950 Car17g00138 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00800 Car-Chr9:4836322 Car17g00138 Car-Chr17:839079 3.47E-57 dispersed
Car17g00138 Car-Chr17:839079 Car17g00628 Car-Chr17:5888019 2.50E-33 dispersed
Car17g00138 Car-Chr17:839079 Car08g00950 Car-Chr8:6348445 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00138 Car_Chr17 FPKM 6.301521 8.011877 0.674682 0.662952 19.995232 18.526073 22.093719 0.313526 0.353917 0.573726