Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00146 ATGGGTTGCAACAAGACCATAGTATGGTTTCGGAGAGACCTCAGGATTGAGGACAACCCTGCTTTAACTGCTGCTGCTAGAGATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAGGAGGGACAATTCTATCCTGGACGGGTATCAAGGTGGTGGCTGAAGCAATCACTTGCCCATTTAAAACAGTCATTGAAATCCCTTGGTTCGGACCTCGTGCTAATGAAAACTCAGAGTACTATTTTCTCTCTTCTGGAGTGTATCAATGCTATTGGGGCAACAAAAGTAGCATTTAATTGTCTCTACGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAAAACTAGTTGAACTCGGAATTTCTGTACAGAGCTACAATGCAGATCTTTTATATGAGCCATGGGACGTATATGATGAAAATGGGAATGCTTTTACGACTTTCAAGGACTATTGGGGTAAATGTCTTCTTTTGCAGAAGGAATTTATTTCAACTCTCCCTCCATGGAAACTACAACATGCTGCAGGATCAGTGGGAAGTTGTTCCATTGAGGAACTAGGTCTTGAAAATGAATCAGAGAAATCTAGCAATGCATTACTAGCAAGAGCTTGGTCGCCAGGGTGGAGCAACGCTGATAAGGCTCTGGCTGAATTTGTAGAAAATCATCTGCTAGAATATGCGAAAAATAGGCAACAGCTTGGCGGTAGCTCGACATCTCTACTGTCCCCATACCTACATTTTGGGGAAGTAAGTGTCTGGAAGGTTTTCCAAAAAGTGAGAATGAAACAGATATTGTGGGCAAGAGAGGAAAACGCTGTAGGGGAACAAAGCACAAATCTGTTTCTCAGAGCTATAGGGCTCAGAGAGTATTCCCGTTATATATGTTTCAACTTTCCATTCACCCATGAGAGATCATTGCTGAGCAGCCTGAAGTTCTTCCCTTGGCATGCTAGCCAGAATAACTTTAAAGCTTGGAGGCAGGGTCGAACTGGCTACCCATTGGTTGATGCTGGAATGAGAGAGCTTTGGGCAACTGGATGGATACACAACAGAATAAGAGTGATTGTTTCTAGCTTTGCAGTAAAGGTTTTGCTTCTTCCTTGGAAATGGGGAATGAAGTATTTCTGGGACACTCTTTTAGATGCAGATTTGGAAAGTGATATCCTTGGTTGGCAATATATTTCTGGGAGTTTGCCAGACGGCCATGAACTTGAGAGATTGGACGATCCACAGATTCAAGGCTCAAAATACGATCCAGACGGAGAATATATTAGGCATTGGCTGCCTGAGCTAGCACGAATGCCGACCGAGTGGATTCATCATCCTTGGGATGCACCTCAGACTGTCCTAAAAGTTTCAGGAGTTGAGTTAGGTTTAAACTATCCTACACCGATAGTTGACTTAGACTTGGCTGCTAATCGATTGAGAGAAGCCATAATCAAAATGCGGGAAATTGAAGCAGCTGCTGGGGCAAATTCAAATGGTACAAATGAAGTTGTTATGGATAATGCAGATAGGATTCAATCCTTGGTGGGTACTGCAAATGTTGTAGCAGAGCCAAAAACCTGTGCTACTTATTCTTCTAATGATCAGAAGGTACCCATGATTCAAACTTCAAAGGTTGATAATCCATTGAGTAGGAAACGGTCTAAGCCTATGGAAGAGAAAGGAGAATTTCAATATAATATTCGCAACGACGTACAAAGTGAAGCTGGGACGTCGAAACCAGACGAAGATTTATGCTCTACTGCTGAATCTTCATCATCTAAGAAGCCATCCACCAGCAGAACTTCCTTTTCTGTTCCACAGTTTTGTTCCTCATCAAAAGGGCTGCCAGAATCATCTGAAGGAACTACTGATAGATGA 1872 42.47 MGCNKTIVWFRRDLRIEDNPALTAAARDGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQSLKSLGSDLVLMKTQSTIFSLLECINAIGATKVAFNCLYDPISLVRDHNIKEKLVELGISVQSYNADLLYEPWDVYDENGNAFTTFKDYWGKCLLLQKEFISTLPPWKLQHAAGSVGSCSIEELGLENESEKSSNALLARAWSPGWSNADKALAEFVENHLLEYAKNRQQLGGSSTSLLSPYLHFGEVSVWKVFQKVRMKQILWAREENAVGEQSTNLFLRAIGLREYSRYICFNFPFTHERSLLSSLKFFPWHASQNNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTEWIHHPWDAPQTVLKVSGVELGLNYPTPIVDLDLAANRLREAIIKMREIEAAAGANSNGTNEVVMDNADRIQSLVGTANVVAEPKTCATYSSNDQKVPMIQTSKVDNPLSRKRSKPMEEKGEFQYNIRNDVQSEAGTSKPDEDLCSTAESSSSKKPSTSRTSFSVPQFCSSSKGLPESSEGTTDR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 911746 917316 + Carg10085-RA Car17g00146 164518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00146 623 MobiDBLite consensus disorder prediction 546 563 - -
Car17g00146 623 Coils Coil 470 490 - -
Car17g00146 623 MobiDBLite consensus disorder prediction 530 545 - -
Car17g00146 623 MobiDBLite consensus disorder prediction 564 616 - -
Car17g00146 623 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Car17g00146 623 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Car17g00146 623 Pfam DNA photolyase 6 159 IPR006050 -
Car17g00146 623 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Car17g00146 623 MobiDBLite consensus disorder prediction 530 623 - -
Car17g00146 623 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 4 133 IPR006050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00146 K12119 CRY2; cryptochrome 2 - cmo:103499419 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00552 Car-Chr8:3454117 Car17g00146 Car-Chr17:911746 3.84E-49 dispersed
Car09g00488 Car-Chr9:2724042 Car17g00146 Car-Chr17:911746 0 dispersed
Car17g00146 Car-Chr17:911746 Car17g01030 Car-Chr17:8108256 5.51E-08 dispersed
Car17g00146 Car-Chr17:911746 Car01g01224 Car-Chr1:11248046 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00146 Car_Chr17 FPKM 1.558635 1.330158 11.598384 9.939816 22.521706 25.249775 25.60145 9.448745 10.276877 9.990496