Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00147 | ATGGACGAGGAACCGAGATCCGGTACTGATCAGGGTGGCGAGGTACGATACCGTGGCGTTCGGCGTCGACCATGGGGGAAATTTGCGGCGGAGATTCGTGACTCTTCGAGGAATGGAGCTAGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCCGCTCGAGCCTATGATCGAGCTGCCTATGTCATGCGTGGTCATTTGGCTGTCCTGAATTTCCCTGATGAGTATCCTTCTCTTGGTGGAAGCTCTTCTGGTTCTTCTTCGTCGGCTCCGACGTCGAGGCGCCAAGGCTCGGGAGGACGCCATGTGATTGAATTGGAATGTCTGGACGATAAGGTGCTCGAGGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGGGTACCCACCGGAGATTTCCCTCCGGCAGGCTCCGATCAAAGACGAGGAGGTCGATTCCCTCGGAGAAGAAGAACCCCACAAGCGAAAATCCTACAGAGGAGTCCGCCGGCGGCCATGGGGAAAATTCGCAGCGGAAATACGGGACTCGACCCGAAATGGTGCTCGGGTTTGGCTCGGAACATTCGACAGCGCCGAGGCGGCTGCTTTAGCCTATGATCAAGCTGCTTTTTCAATGAGGGGTTCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCACTGAAGGAGATGGAGATGATAAACTCCAGTGAAAACGGCGGCGATGGCGGATCTCCGGTGGTGGCGCTGAAGAGAAAACACTCGATGAGAAAGAAATTCACAAGGAGAAAGAGCAAAGACAGAGATGGGAGTGGAAAGATTGTGAATAATGTGGTTGTTTTGGAAGATCTTGGGCCTGATTATTTGGAAGAACTTCTAGAGTCGTCGGAGAATCTCCGGCCA | 957 | 53.29 | MDEEPRSGTDQGGEVRYRGVRRRPWGKFAAEIRDSSRNGARVWLGTFNTAEEAARAYDRAAYVMRGHLAVLNFPDEYPSLGGSSSGSSSSAPTSRRQGSGGRHVIELECLDDKVLEELLEYEEKRKNSLPFNENDSGEMLLHSLISEAAGYPPEISLRQAPIKDEEVDSLGEEEPHKRKSYRGVRRRPWGKFAAEIRDSTRNGARVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSSENGGDGGSPVVALKRKHSMRKKFTRRKSKDRDGSGKIVNNVVVLEDLGPDYLEELLESSENLRP | 319 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 921956 | 931446 | - | Carg10084-RA | Car17g00147 | 164519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00147 | 319 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
| Car17g00147 | 319 | MobiDBLite | consensus disorder prediction | 253 | 289 | - | - | |
| Car17g00147 | 319 | MobiDBLite | consensus disorder prediction | 80 | 97 | - | - | |
| Car17g00147 | 319 | Pfam | AP2 domain | 180 | 230 | IPR001471 | GO:0003700|GO:0006355 | |
| Car17g00147 | 319 | Pfam | AP2 domain | 16 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
| Car17g00147 | 319 | MobiDBLite | consensus disorder prediction | 80 | 102 | - | - | |
| Car17g00147 | 319 | ProSiteProfiles | AP2/ERF domain profile. | 180 | 238 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g01142 | Car17g00147 | CCT | |
| Car14g01624 | Car17g00147 | CCT | |
| Car06g01142 | Car17g00147 | ECH | |
| Car14g01624 | Car17g00147 | ECH | |
| Car08g00962 | Car17g00147 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00962 | Car-Chr8:6429665 | Car17g00147 | Car-Chr17:921956 | 7.41E-22 | dispersed | |
| Car17g00147 | Car-Chr17:921956 | Car17g01253 | Car-Chr17:9495205 | 3.41E-27 | dispersed | |
| Car14g01624 | Car-Chr14:13046883 | Car17g00147 | Car-Chr17:921956 | 8.14E-24 | wgd | |
| Car17g00147 | Car-Chr17:921956 | Car19g00066 | Car-Chr19:572150 | 1.60E-21 | wgd | |
| Car17g00147 | Car-Chr17:921956 | Car02g01500 | Car-Chr2:9715850 | 4.09E-22 | wgd | |
| Car17g00147 | Car-Chr17:921956 | Car06g01142 | Car-Chr6:8477035 | 3.16E-102 | wgd | |
| Car17g00147 | Car-Chr17:921956 | Car08g00961 | Car-Chr8:6422238 | 1.30E-20 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5023 | PF00847 | AP2 | 2.60E-15 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00147 | K14516 | - | csv:101206564 | 302.367 |