Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00156 | ATGCTTTTTTTGCCCTCAAATTTTCGTCGGGTGGGCTTTCCGGCCACCGACCCGGTTTCTACCACCGTCGGCGGCTGCGGAACAGAGCACGACAACGATGAAGACGAGCTGAAGGAAGGTAGCGTGCTGGTTGGGAACCGCCGAACGAGAGGGCGGCCACCGGGAGCGAAGAACAAACCAAAACCCCCAATCATCGTCACGCGGGACAGTCCTCACGCGCTTCGCACGCACGTGATCGAGATCGCCGGAGGAGCCGACGTGGCGGACAGCATAAACCAATTCTCCAGCCGCCGACAACGTGGGGTTTGTGTTCTCAGCGGAAACGGCACGGTTGCCGACGTGACTCTCCGGCAATCCGCCACCGTGATCCAACTTCACGGCCTGTTCGATATTCTATCACTGAGCGGCTCTTTTCTTCCCGGTCCAGCCATCCCCTGTTCCACTAGACTCACCGTGTACCTCGCCGGTGGTCAAGGGCAGGTGGTCGGAGGGACAGTGGTGGGCCCTTTGTTGGCAGCTGGGCCTGTCATTTTGATAGCTGCTACTTTTGCTAATGCAATTTATGAGAGATTGCCTTTACAAGACGACCATGATTACCAAGAAACAGAGGTTTCTCCGGCCGCTATAGACAGCGGAGAAGTGGAGGAGCCGCCGCTTCCGCCGCCGTATCCCCGGACGACAACTTCAATTTATGACTTGATGACACCAAATAATGATCATGAAATGGGAATTGATAAGGTTTGGTTGGGCTCAGCTTAG | 759 | 55.86 | MLFLPSNFRRVGFPATDPVSTTVGGCGTEHDNDEDELKEGSVLVGNRRTRGRPPGAKNKPKPPIIVTRDSPHALRTHVIEIAGGADVADSINQFSSRRQRGVCVLSGNGTVADVTLRQSATVIQLHGLFDILSLSGSFLPGPAIPCSTRLTVYLAGGQGQVVGGTVVGPLLAAGPVILIAATFANAIYERLPLQDDHDYQETEVSPAAIDSGEVEEPPLPPPYPRTTTSIYDLMTPNNDHEMGIDKVWLGSA | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 964357 | 965177 | + | Carg10075-RA | Car17g00156 | 164528 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00156 | 252 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 75 | 184 | IPR005175 | - | |
| Car17g00156 | 252 | ProSiteProfiles | PPC domain profile profile. | 71 | 205 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car17g00156 | Car-Chr17:964357 | Car06g00967 | Car-Chr6:7419418 | 3.62E-66 | dispersed | |
| Car17g00156 | Car-Chr17:964357 | Car05g01151 | Car-Chr5:10998556 | 7.71E-61 | wgd | |
| Car17g00156 | Car-Chr17:964357 | Car06g01150 | Car-Chr6:8516857 | 1.92E-65 | wgd | |
| Car17g00156 | Car-Chr17:964357 | Car08g00972 | Car-Chr8:6470855 | 3.60E-65 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00156 | - | - | cpep:111806975 | 446.817 |