Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00170 ATGGCGTTGGCTAGCACTTACTCCATTGGTCGGATCAACTTCCTTCGTCTTCCCCTCTTCGCCACTGCTGCTACTGCTCCTCATTCTCAGAGCTCTCAATTTCTCAGAGCCACCTGCCTCTTCTCTAGAAAACTGTCAACTTCCTTGGCCATGGACGGTTCAAAGATAAGTGCAGTTGTTGAGGAGTTTCCATCTGGGATTGATCCAGCAACTGAGGAAGAATATGTAGAACAGTCCAAATTACTTGAAGAATTCACAAAAATTCCTAACTTTGATAAGGCATGGACGTTTAAGTCTGATAGTGGAGACTCCGTGGTAACGTTTTCAATTAGCCAAGCAAATCTTCTAGCAAATAAGAAGAGAAAATATACTTTGTCAGCTCACATTTCCGAGGGAAATGACGACAGTGAAGTAAACTTTAAATGGACGCCATTCCCTGTTGAAATGGTTGGAATCTCTACAATAGTGCCATCGCCAGCAGGCTCAAAATTTCTTGCAGTTCGTAATCCTGAAAATGATTCTCCAGTTCAATTGGAAATTTGGAGTGCAGGTCAACTTGAAAAGGAGTTTCACATCCCCCAATCTGTTCATGGCTCAATATATACTGATGGATGGTTCGAGGGAATCTCTTGGAACTCAAATGAAACTTACATTGCTTATATTGCGGAGGAACCTTCTCCCTCCAAACCAACGTTTACTCTTTCTGGATATCAAAAAGGTTGCTCAACAGACAAGGATTCTACCAATTGGAAAGGTCAAGGGGATTTTAAGGAAGAATGGGGGGAAGCTTATGCAGGTAAAAGGCAGCCTGCTCTCTTTGTCGTCAATATTGACAGTGGAGAGGTAAAGCATGTGAAAATAAGCGAGCATTCTTTGAGTTTGGGTCAAGTTGTATGGGCTCCATCTATTGGCGAGCATCAATATTTGGTTTTTGTTGGATGGTCACCAGAGCCTCGAAAACTTGGTATGATCTACTGTTATAATCGGCCTTGTGCATTATATGCAGTTAAGGCCCCGGAGTTTGGATCAGAAGTCAATGAACATAAACTCAAAGATGAATCAAAAGAGGATTTTCCCATCTATAATCTAACTCAGAACATAAGCAGTGCCTTTTCTCCTCGGTTCAGCCCAGATGGAAAGTCACTTGTATTTTTATCTGCACACTCTTCTGTGAACACTGGCGCCCATTCCGCAACAAATTCTCTTCACAGAATCGACTGGCCTAGAGATGGGAAACTTAGTTTTAGTGAAACTATTGTTGATGTGGTTCCTGTGGTGCACTGGGCCAAGGACGACCTCTTTCCTGGCCTCTATTCACATGGTTTGCTGGCTAATCCATGCGGTGAAGTCTCATGCGTCAGTCCTGACCACACAGACTATTCTTGGAATGTTCTTGCTCTAGATGGAGACAACGTTATTGCTGTTCGTAGCGGCCCAGTGACTATTCCTGGACTCAAGTATGGTTTTCTTATTGAGACAGAAACTAAGGATGTTGTATGGAATTGGGTCGATGTATTAAATCCTATGTTTAATTGCTCTACGAAGGCTAGAACTCTACTCTCAAATATCTTGTTCAGTATATTGAAGATTCCAGTCAAGGATGTTTCCAACTGCGTGACAAAAGGTGCTAGTGAACCTTTTGAAGCTATCTTTGTAGCTCCGTTACCCAAAGGTAATGAGTTGAAACCACTTATTGTTAACCTTCATGGCGGTCCACATTCTACATCAACATCAAGCTTCTCGAAGTCCTTGGCATTTCTCGCTGCCGTAGGATTCAATCTTTTGATTGTGAACTATAGAGGTTCATTGGGGTTCGGTGAGGATGCATTGCAATCTCTTCCTGGAAAAATTGGGTCTCAGGATGTCAATGATGTACTTGCCGCATTAGATCACATTATCGACCAGGGACTTGCCAATCCAGCTAAAGTTGCAGTTCTTGGCGGTTCTCATGGAGGTTTTTTGACAACTCATTTGATTGGCCAGGCACCAGATAGATTTGTGGCAGCTGCTGCAAGGAATCCTGTGTGTAACCTTGCTTTAATGGTCGGCACATCAGATATTCCTGATTGGTGTTATGTGGAATGTTATGGAAGGGAAGGAAAAAATTACTTCACGGAAGCACCATCTGCTGAGCACCTAATCCACTTATACCACATGTCTCCTATTCGACATGTCTCAAATGTTAAAACACCTACCATTTTTCTTTTGGGTGCTAAAGATCTTCGTGTTCCATTTTCAAATGGATTGCAATTTGCGCGAGCGTTGAAGGAGAAAGGAGTTGATACGAAGGTGATCGTGTTTCCAGATGATAAGCATCCAATTGACAGGCCGCAATCGGATTTTGAAAGCTTCCTCAACATTTGTGTGTGGTTCAAGAAGTACCTCAAGTGA 2391 42.7 MALASTYSIGRINFLRLPLFATAATAPHSQSSQFLRATCLFSRKLSTSLAMDGSKISAVVEEFPSGIDPATEEEYVEQSKLLEEFTKIPNFDKAWTFKSDSGDSVVTFSISQANLLANKKRKYTLSAHISEGNDDSEVNFKWTPFPVEMVGISTIVPSPAGSKFLAVRNPENDSPVQLEIWSAGQLEKEFHIPQSVHGSIYTDGWFEGISWNSNETYIAYIAEEPSPSKPTFTLSGYQKGCSTDKDSTNWKGQGDFKEEWGEAYAGKRQPALFVVNIDSGEVKHVKISEHSLSLGQVVWAPSIGEHQYLVFVGWSPEPRKLGMIYCYNRPCALYAVKAPEFGSEVNEHKLKDESKEDFPIYNLTQNISSAFSPRFSPDGKSLVFLSAHSSVNTGAHSATNSLHRIDWPRDGKLSFSETIVDVVPVVHWAKDDLFPGLYSHGLLANPCGEVSCVSPDHTDYSWNVLALDGDNVIAVRSGPVTIPGLKYGFLIETETKDVVWNWVDVLNPMFNCSTKARTLLSNILFSILKIPVKDVSNCVTKGASEPFEAIFVAPLPKGNELKPLIVNLHGGPHSTSTSSFSKSLAFLAAVGFNLLIVNYRGSLGFGEDALQSLPGKIGSQDVNDVLAALDHIIDQGLANPAKVAVLGGSHGGFLTTHLIGQAPDRFVAAAARNPVCNLALMVGTSDIPDWCYVECYGREGKNYFTEAPSAEHLIHLYHMSPIRHVSNVKTPTIFLLGAKDLRVPFSNGLQFARALKEKGVDTKVIVFPDDKHPIDRPQSDFESFLNICVWFKKYLK 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1054367 1063037 + Carg10061-RA Car17g00170 164542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00170 796 Pfam Prolyl oligopeptidase family 579 796 IPR001375 GO:0006508|GO:0008236
Car17g00170 796 ProSitePatterns Prolyl endopeptidase family serine active site. 624 654 IPR002471 GO:0004252|GO:0006508
Car17g00170 796 Pfam Acylamino-acid-releasing enzyme, N-terminal domain 71 341 IPR045550 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00170 K01303 APEH; acylaminoacyl-peptidase [EC:3.4.19.1] - csv:101207866 1338.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00927 Car-Chr2:6560459 Car17g00170 Car-Chr17:1054367 7.63E-10 dispersed
Car08g00378 Car-Chr8:2450510 Car17g00170 Car-Chr17:1054367 1.82E-09 dispersed
Car17g00170 Car-Chr17:1054367 Car01g01452 Car-Chr1:12453668 5.78E-09 dispersed
Car17g00170 Car-Chr17:1054367 Car09g00178 Car-Chr9:891250 1.20E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g595 . Blo12g00352 Bda03g00853 . Bpe04g00806 . Bma04g00754 . . Cmo17g00189 . . . . . . . . . . . . . . Cla06g00623 Cam06g0662 Cec06g0665 Cco06g0672 Clacu06g0649 Cmu06g0642 Cre06g1410 Cone14ag0894 . . . . Csa02g01108 Chy05g00368 . . . . . . . . . Sed04g1948 . . . Cma17g00192 . Car17g00170 Cpe12g00164 . Bhi12g02257 Tan06g2468 Cmetu05g0174 . . . Lcy13g0325 . . . . . . . Lsi09g01280 . . Cme05g00514
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009067 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00170 Car_Chr17 FPKM 0.0 0.0 0.573294 0.0 0.0 0.0 0.0 0.0 0.0 0.0