Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00171 ATGTTCGTGAAGCTGCAGTATTTGGATACGCCCTGCTTCCCTGGACTGAGTTCCACCCTCAGGTCATCCACCGTCGGAGTCTCAATTTCTCCCCCTGATAATCTCGTCCCCATTTCCAGGAAGTCCAAACACTGCTGGATTCCTGAATGTCCGAACAGAGACTCAAAGAACGTCGGTGGAGTTAAAAAATGCACTAATAATAATGGAGGTTGCCGGCAGGAAACTCGCCTGAAAAAAGCGAGTAAAACGGAGGAACGAGAACCCCACAAAAGAAATCGCCATTTGGGTAATAGAGTTGTGAAAAAGGATGAATGGGAAGATGGAAATGGGTCGGTGGAAAAAGTGCACCCCAAGTGTTCGACGAAATGCCTATCGTATGGTGGATGCATACCAGCGATTTTGCAAGCGTTAGATGAAGTCAGTGACTTGGATGAAGCACTGAAGCCTTGGAAAGATAAGCTTAATAGCAAGGAAAGGAGTATAATTCTGAAAGAGCAGACCAGTTGGGAGAGGGCTTTGGAGATTTTCGAGTGGTTTAAAATGGCAGGTGGCTATGAAGTGAATGTGATTCACTATAATATTGTTCTTCGGATTCTTGGGAAGGCCCAGAAATGGAGACTAGTTGAGAGTTTGTGGGCAGAGATGAACAAAAGGGGTATTAATCCGATAAATTCGACTTATGGAACGTTGATCGATGTTTACGGGAAAGGGGGCTTTACAGAAGAGGCGTTGGCATGGCTTGAAAGGATGAATGAACAGAGAATGGAACCGGATGAGGTCACCATGGGAATTGTTGTTCAATTGTATAAGAAGGCTGGAGAGTTTCAGAAGGCTGAGAGTTTCTTCAAGAAGTGGTCATCAAGAAACTCAACGAAATGTGAGATTACCAACCAGAACGAAGTAGCTTCTGCTAAAGTTGAGAATTCTCTGCACCCTCCTCATGTTAGTTTGAGTACCTATACATATAATACATTGATTGACACATATGGGAAGGCTGGACAGCTACAAGAAGCCTCAACGACTTTCGAAAACATGCTAAATGAAGGAGTTGCGCCGACAACCGTGACTTTCAATACTATGATTCACATTTGTGGCAACCATGGCAAGTTGAAAGAAGTGACATTGCTAATGCAGAAGATGGAGGAGCTTCAATGCCCACCTGATACAAGAACATACAATATCCTCATTTCTCTTCATGCTAAGCATGATAACATTGACTTGGCTTCAAATTATTTTGCAGAGATGAAGGAGGCTTGTCTTCAGCCGGATATAGTGAGCTACCGTACTCTTTTGTATGCTTATTCTATCAGGCAGATGGTTGTGGAGGCTGAACAACTCGTAGCCGAAATGGATGAAAGGGGACTTGAGATTGATGAATTCACCCAATCAGCACTGACCCGTATGTATATCAACGCAGAAATGCTCGAAAAGTCGTGGTCGTGGTTCTGGAGATTTCATCTTACAGGGCGTATGAGCTCCGAGTGTTATTCGGCTAATATTGATGCATATGGGGAGCGTGGATGTATTGTAGAAGCAGAGAGAGTTTTTGTCAGCTGCCAAGAAGAGAAGAAGCTCACAGTCCTTGAGTATAATGTGATGATTAAAGCCTATGGTGTGGTAAAGGATTATGTCAAAGCACAAAAATCATTTGATAGTATGGAGAGTAATGGCGTCACTCCTGATAAATGTAGCTATAGTTCTCTGATACAGATATTGTGTGGTGCTGATATGCCGGCCATGGCACTCTCTTATCTGAGGAAGATGCAGTCAGCTGGATTGGTAAGTGATTGCATTCCATATTCGGTGGTTATATCGAGCTTTTCGAAACTCGGTTATTTGGAAAAGGCGGACGAACTTTATAGAGAGATGATCGAACATGGTATGCAGCCTGATATCGTTGTTTATGGTGTGCTGATAAATGCTTTTGCTGATGCTGGGAGTGTTAGAGAAGCTATTGGTTATGTCGACGCAATGAAACGGGCTGGTTTGCCTGGTAATACCGTTATATACAACTCGTTGATAAAGCTCTACACCAAAGTTGACTACCTCAAAGAAGCACAGGAAGCATACAAGATGCTTCAGCAAACAGATGATGGTCCAGCTATCTATTCTTCGAATTGTATGATCGACATTTATAGCAAACATTCGATGGATAAACAGGCGGAAGAGATTTTCGAGAGGTTGAAGAGAAAGGGAGAAGCAAATGAGTTCACTTTTGCAATGATGTTGTGCATGTACAAGAAAAAAGGAAGATTACAGGAAGCAATTAGTATTGCAAGACAGATGAAGGAACAAGGACTTTTAACAGAATTGTTGAGCTTCAATAACATGATCAGTTTATACGCTATGGACGGTCGATTCAAGGAGGCAGTTAGTACATTCCAAGACATGATTAAAGCTTCCATTCAACCTGATGAATGCACGTATAAATCGCTCGGGGTCATTCTGTTAAAATGTGGCGTTTCGAAGCAGGCAGTCAGAAAGCTAGAATTATCGGTAAAAAAGGACGCTCAGAGCGGATTACAGGCGTGGGGTTCGGTTCTATCTTCTGTTGTTGGAATGAGTATCAAGGATGATTATCTATAA 2586 42.65 MFVKLQYLDTPCFPGLSSTLRSSTVGVSISPPDNLVPISRKSKHCWIPECPNRDSKNVGGVKKCTNNNGGCRQETRLKKASKTEEREPHKRNRHLGNRVVKKDEWEDGNGSVEKVHPKCSTKCLSYGGCIPAILQALDEVSDLDEALKPWKDKLNSKERSIILKEQTSWERALEIFEWFKMAGGYEVNVIHYNIVLRILGKAQKWRLVESLWAEMNKRGINPINSTYGTLIDVYGKGGFTEEALAWLERMNEQRMEPDEVTMGIVVQLYKKAGEFQKAESFFKKWSSRNSTKCEITNQNEVASAKVENSLHPPHVSLSTYTYNTLIDTYGKAGQLQEASTTFENMLNEGVAPTTVTFNTMIHICGNHGKLKEVTLLMQKMEELQCPPDTRTYNILISLHAKHDNIDLASNYFAEMKEACLQPDIVSYRTLLYAYSIRQMVVEAEQLVAEMDERGLEIDEFTQSALTRMYINAEMLEKSWSWFWRFHLTGRMSSECYSANIDAYGERGCIVEAERVFVSCQEEKKLTVLEYNVMIKAYGVVKDYVKAQKSFDSMESNGVTPDKCSYSSLIQILCGADMPAMALSYLRKMQSAGLVSDCIPYSVVISSFSKLGYLEKADELYREMIEHGMQPDIVVYGVLINAFADAGSVREAIGYVDAMKRAGLPGNTVIYNSLIKLYTKVDYLKEAQEAYKMLQQTDDGPAIYSSNCMIDIYSKHSMDKQAEEIFERLKRKGEANEFTFAMMLCMYKKKGRLQEAISIARQMKEQGLLTELLSFNNMISLYAMDGRFKEAVSTFQDMIKASIQPDECTYKSLGVILLKCGVSKQAVRKLELSVKKDAQSGLQAWGSVLSSVVGMSIKDDYL 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1065041 1067626 + Carg10060-RA Car17g00171 164543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Car17g00171 861 Pfam Pentacotripeptide-repeat region of PRORP 322 478 IPR033443 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Car17g00171 861 Pfam PPR repeat family 530 573 IPR002885 -
Car17g00171 861 Pfam PPR repeat family 773 812 IPR002885 -
Car17g00171 861 Pfam PPR repeat family 188 234 IPR002885 -
Car17g00171 861 Pfam PPR repeat family 600 643 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 770 804 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 666 700 IPR002885 -
Car17g00171 861 Pfam PPR repeat 260 288 IPR002885 -
Car17g00171 861 Pfam PPR repeat 738 767 IPR002885 -
Car17g00171 861 Pfam PPR repeat 668 694 IPR002885 -
Car17g00171 861 Pfam PPR repeat 704 732 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Car17g00171 861 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Car17g00171 861 MobiDBLite consensus disorder prediction 76 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00171 - - - csv:101203255 1466.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00866 Car-Chr12:8447373 Car17g00171 Car-Chr17:1065041 4.01E-24 dispersed
Car14g00553 Car-Chr14:3019496 Car17g00171 Car-Chr17:1065041 9.81E-17 dispersed
Car17g00171 Car-Chr17:1065041 Car09g00353 Car-Chr9:1931048 1.03E-10 dispersed
Car17g00171 Car-Chr17:1065041 Car19g00423 Car-Chr19:6056876 8.39E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g594 Blo01g00101 . . . . . . Bma05g01080 . Cmo17g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00871 . . . . . . . Cma17g00193 . Car17g00171 Cpe12g00165 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011985 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00171 Car_Chr17 FPKM 4.460039 4.513917 7.032135 6.697554 5.820573 5.251458 5.140375 2.788802 1.562361 2.323868