Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00172 ATGGAGCACGGTGGTCCGCCCACGCCGCCGCCGCTCCCTCCGCTGCCTACCGGCGCTATACTCCTCGGCAAGTACCAATTGGGACGTTTCCTCGGTCGTGGAAGCTTTGCCAAGGTGTACCAGGCCTGTTCTCTTGCCGATAACTCCATCGTCGCCATTAAAATCATTGACAAGAACAAAACCATCGATGCCGCTATGGAGCCGTGCATTGTCCGTGAGATTTCCGTCATGCGCCGTCTTCAGCACCATCCGAATATCCTCAGAATCCATGAAGTTATGGCGACGAAGACGAAGATCTACCTCGTTGTCGATTACGCCTCTGGCGGTGAGCTATTCGCGAAACTCCTCCGCCGTGGACGGCTGACAGAATCAACCGCCCGCCGGTACTTTCAACAACTGGTCTCTGCTCTACATTTCTGTCACCAGAACGGTGTCGCTCATCGCGACATCAAGCCCCAAAATCTTCTACTCGATGAAGACGGTAACCTCAAGGTCTCCGACTTCGGTCTCTCGGCCTTACCAGAGCAGATCAAAGACGGAATGCTCCATACCGCATGCGGAACTCCAGCATACACCGCGCCGGAGGTTGTTTCCCGACGAGGCTACGACGGCGCTAAAGCCGACGCGTGGTCCTGCGGCGTTATCCTCTTCGTTTTACTCTCCGGCCATCTTCCATTCAGCGACAACAACCTGGTAGCCATGTACAAGAAGGTTTATCGACGGGAATATCACTTCCCCGATTCAATTTCGAAGCCAGCGAGACATTTGATCTTCCAATTACTCGATCCTGATCCGAATACAAGGATGAGCATGGAGGCGTTGATGCAGCATTCGTGGTTCAAGAAATCGCTGCGATCGAAGCCCCAAATTAACAACAAGAGCTTGTTTGAATCATTGGGTAATTACAAATCTGATTTAGGGGTTTCTGGGTTAAATGCGTTTCATATAATATCGATGTCTTCTGGGTTGGATCTGTCTGGTTTGTTCGAGACAACGGATTGTAAGAAGAAGAGGTTCACGACAGGTGTGAGTATGGAGAAGGTGGAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTACAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTGGGGAAAGGAAGGATGATACTGGTGGTGGAGGCTTTGAAAATAACCTCAAATCTGTTAATGGTGGAAGTGAAGGCAGCTGAATCCAAGATGGAGTTTGAGAGGACGCATTGGGGGGATTTGAAAGCCAAGTTGCAGGACATTGTTGGTTCCTGGCACTCAAATGAGGCAATGTGA 1293 50.58 MEHGGPPTPPPLPPLPTGAILLGKYQLGRFLGRGSFAKVYQACSLADNSIVAIKIIDKNKTIDAAMEPCIVREISVMRRLQHHPNILRIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYHFPDSISKPARHLIFQLLDPDPNTRMSMEALMQHSWFKKSLRSKPQINNKSLFESLGNYKSDLGVSGLNAFHIISMSSGLDLSGLFETTDCKKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALKITSNLLMVEVKAAESKMEFERTHWGDLKAKLQDIVGSWHSNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1068128 1069420 - Carg10059-RA Car17g00172 164544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00172 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Car17g00172 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00172 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Car17g00172 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Car17g00172 430 Pfam Protein kinase domain 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00172 430 Pfam NAF domain 311 365 IPR004041 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01592 Car17g00172 CCT
Car08g00998 Car17g00172 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00172 Car-Chr17:1068128 Car03g00265 Car-Chr3:3839361 5.98E-130 dispersed
Car14g01592 Car-Chr14:12917140 Car17g00172 Car-Chr17:1068128 0 wgd
Car17g00172 Car-Chr17:1068128 Car08g00998 Car-Chr8:6865320 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89464 PF00069 Pkinase 2.20E-74 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00172 K12761 - csv:101215156 793.112