Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00177 ATGGCGTTCCGATTTGGAGTTTGTCCACGCGCCACCGCTATCTCCAACTTTCCCCAACTCAATGACAAGAACTTTCTCGTTCTCCCTCTGGAACGAGAGGTTGAGATTCGGCGGGCGAGAGGCACGAGGAGATTGAGAATTAGGGTTTCGGATGGAGAAGAATCGTATCTCGGGATGTGGAAGAACGCGGTGGAGCGCCGGAGGAAAGCTAATGAGTTTCGGAAAGTTGTGGAGAATACTGTGGGAAATGACAATCGCAATGACGGTGATCGAAGTGATGATCAGTTGGAGGAGAAGAGCGAGGAGTTCAGTAAGATTCTTCAGGTCCCGACGGAGGAAAGGGATAAGATTCAGCGGATGCAGGTCATACATCGAGCCACTGCCGCCATTGCAGCTGCTCGTGCACTTGTTTGTGAGACTAGAATTGTAGCTGATTCGAATACTTCTTTGAATTTGAATAGTAGGAATGACGGTGGACTGCTCGATCGTGAAGAAGCATCATCTGAATTTCAAAGCGAGAACACCCTGCTACCCAAGTCTGAAACTTCACCAACTGCGACCCCTGGTCCAGATTTCTGGTCTTGGACACCCCCTCCAGATAATGATGGGAATGGTAATGCTTTCAGTGAGTTGCGACCAATTGAAAAATCACAGGTATATCCAATGCTATCCAATTTTGTTAAGGAGAAAGAGCCTCCGGTGGGATTTCTCTCAATTCCTTTTCAGAGTGAACTTCCTGAAAGCGTCAAACCTCTTCTACCACCTTTTCAATCATTGATGGACATTGAAAAGTTAGAATCATTGGAAACCAATACAGAGACACATTCCTTGGAAGACGATGAAAATGTTGGGATGGAGTTTTCAGTACTTGCAGCAGAAGCATCTCAGGCGCTTAGTAGCATAGATAAAGAATCAACAAAAGGAATAGATTCAGATGGGTCACGATGGTGGAAGGAGATGGGAGTTGAGCAGAGACCGGATGGAGTGATTTGCAAATGGACACTAACGAGGGGAGTTAGCGCAGACTTTGCCACCGAGTGGCAGAACAAGTATTGGGAAGCTGCTGATGAGTTTGGTTATAAGGAACTTGGTTCAGAGAAATCTGGCCGCGATGCCTATGGAAGTGTTTGGCGTGAATATTGGAGAGAATCTATGCAGCAGGAGCAAGGCCTTGTTCACCTTGAAAAAACTGCAGACAAATGGGGGAAAAATGGAAGTGGCACCGAGTGGCAAGAGAAATGGTGGGAATATTATAATACCTCTGGTCAAGTTGAAAAAAATGCTCATAAATGGTGTAAAATTGACCCGAACACGTATGTCGATCCTGGTCATGCTCATATCTGGCATGAAAGATGGGGTGAAAAGTATGATGGACAAGGTGGCAGCATCAAGTACACAGATAAATGGGCTGAAGGATGTGAAGGTGATGGTTGGACGAAGTGGGGCGACAAATGGGACGAAAACTTCGATTCGAATGGTCATGGCGTCAAACAGGGGGAAACATGGTGGGAAGGTAAACATGGAGAACGGTGGAACCGTACGTGGGGCGAGGGCCACAGTGGTTCAGGCTGGGTTCACAAGTATGGCAAGAGCAGCAGTGGGGAGCATTGGGACACACATGTTCAGCAGGAAACCTGGTATGAGAGATTCCCACATTTCGGCTTTTATCACTGCTTCAACAATTCAGTCCAGCTCCGAGAAGTTCAGAAGCCATCTGAGACGTCTTTGTAA 1731 46.97 MAFRFGVCPRATAISNFPQLNDKNFLVLPLEREVEIRRARGTRRLRIRVSDGEESYLGMWKNAVERRRKANEFRKVVENTVGNDNRNDGDRSDDQLEEKSEEFSKILQVPTEERDKIQRMQVIHRATAAIAAARALVCETRIVADSNTSLNLNSRNDGGLLDREEASSEFQSENTLLPKSETSPTATPGPDFWSWTPPPDNDGNGNAFSELRPIEKSQVYPMLSNFVKEKEPPVGFLSIPFQSELPESVKPLLPPFQSLMDIEKLESLETNTETHSLEDDENVGMEFSVLAAEASQALSSIDKESTKGIDSDGSRWWKEMGVEQRPDGVICKWTLTRGVSADFATEWQNKYWEAADEFGYKELGSEKSGRDAYGSVWREYWRESMQQEQGLVHLEKTADKWGKNGSGTEWQEKWWEYYNTSGQVEKNAHKWCKIDPNTYVDPGHAHIWHERWGEKYDGQGGSIKYTDKWAEGCEGDGWTKWGDKWDENFDSNGHGVKQGETWWEGKHGERWNRTWGEGHSGSGWVHKYGKSSSGEHWDTHVQQETWYERFPHFGFYHCFNNSVQLREVQKPSETSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1095728 1099364 + Carg10054-RA Car17g00177 164549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00177 576 MobiDBLite consensus disorder prediction 78 102 - -
Car17g00177 576 MobiDBLite consensus disorder prediction 149 189 - -
Car17g00177 576 MobiDBLite consensus disorder prediction 170 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00177 - - - csv:101218256 1005.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01002 Car17g00177 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00868 Car-Chr5:8492862 Car17g00177 Car-Chr17:1095728 3.05E-61 dispersed
Car12g00653 Car-Chr12:4413851 Car17g00177 Car-Chr17:1095728 1.42E-61 dispersed
Car17g00177 Car-Chr17:1095728 Car08g01002 Car-Chr8:6888092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g581 Blo01g00108 . . Bda08g00259 . . . Bma05g01088 Cmo08g01094 Cmo17g00194 . . . . . . . . . . . . . . Cla06g00618 Cam06g0656 Cec06g0660 Cco06g0665 Clacu06g0643 Cmu06g0637 Cre06g1404 Cone14ag0888 . . . . Csa02g01118 Chy05g00374 . . . . . . . . . . . . Cma08g01119 Cma17g00200 Car08g01002 Car17g00177 Cpe12g00171 Cpe17g00166 Bhi12g02246 . . . . . Lcy13g0317 . . . . . . . Lsi09g01288 . . Cme05g00496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007920 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00177 Car_Chr17 FPKM 36.548367 39.737595 123.605667 124.854446 12.86014 11.572425 11.747218 105.012939 104.372795 103.194183