Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00181 ATGGAAGGAAAGCACCAAAACCTGATCCAAATCCCCAGAGTGAAACTGGGTAGCCAGGGATTAGAGGTTTCAAGGTTGGGTTTCGGATGTGCAGGACTTTCAGGCTATCTCAGCGCTCCCCTCTCTCATGAAGAAGGATGCAACATAATCAAACAAGCTTTCATCAAAGGAATAACTTTTTTTGATTCTTCTGATCTGTATGGTGCTGATCATGACAATGAAATCATGATTGGAAAGGCTTTGAAACAGCTTCCTAGAGAAAAAATTCAGTTAGCTACAAAGTTTGGGATTGTACCATTAGGAGGATTTGAAATTGCAGTTAATGGGACACCTGAATACGTAAGGAACTGCTGTGAAGCGAGTCTCAAGCGCCTTCAAGTTGATTATATCGACCTCTACTATCAGCATCGTGTCGACATATCTGTGCCAATAGAAGAAACTATGGGAGAGCTAAAGAAGCTGGTGGAAGAGGGGAAGATAAAGTACATCGGGTTGTCTGAAGCAAGTGGAAACACAATCAGGAGAGCCCATGCTGTTCATCCGATCACTGTCGTTCAAATGGAGTATTCGTTGTGGAGTCGTGACATCGAAGATGACATAATTCCACTTTGTAGGGAGCTTGGAATTGGGATAGTGGCTTACAGTCCTCTGGGTCGAGGGTTCTTTGGGGGCAAAGCAATTGCAGAGAGCTTGCCAAGTGAAAGCTCATTGGCTTATCATCCAAGGTTCAGCAAGGAGAGTTTAGAACAGAATGAAGCTATTTACAGAAGGCTTACTAACCTTGCTGTGAAGCACGGTTATACCACAGTTCAGTTGGCTTTAGCTTGGCTGCTCCATCAGGGTATTGATATTATTCCCATCCCAGGGACAACCAAACTTGGGAACCTTGACAGCAACACTGAGTCATTGGGTGTGAAGCTAACAGAGAAAGATTTCAAAGAAATTGGTGATGCCGTGCCGGTTGATGAAGTTAGAGGCCAGCGAGAATACGATGTTCTCACCAAATATATGTGGAAGTTTGCAGATACCCCATTAAGGAGTTGA 1044 43.97 MEGKHQNLIQIPRVKLGSQGLEVSRLGFGCAGLSGYLSAPLSHEEGCNIIKQAFIKGITFFDSSDLYGADHDNEIMIGKALKQLPREKIQLATKFGIVPLGGFEIAVNGTPEYVRNCCEASLKRLQVDYIDLYYQHRVDISVPIEETMGELKKLVEEGKIKYIGLSEASGNTIRRAHAVHPITVVQMEYSLWSRDIEDDIIPLCRELGIGIVAYSPLGRGFFGGKAIAESLPSESSLAYHPRFSKESLEQNEAIYRRLTNLAVKHGYTTVQLALAWLLHQGIDIIPIPGTTKLGNLDSNTESLGVKLTEKDFKEIGDAVPVDEVRGQREYDVLTKYMWKFADTPLRS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1115112 1118858 + Carg10050-RA Car17g00181 164553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00181 347 Pfam Aldo/keto reductase family 26 315 IPR023210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00181 - - - zju:107423121 520.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01302 Car-Chr14:11059682 Car17g00181 Car-Chr17:1115112 5.56E-124 dispersed
Car14g01676 Car-Chr14:13347127 Car17g00181 Car-Chr17:1115112 2.27E-30 dispersed
Car15g00939 Car-Chr15:6700253 Car17g00181 Car-Chr17:1115112 1.58E-13 dispersed
Car17g00181 Car-Chr17:1115112 Car19g00386 Car-Chr19:5688042 1.20E-23 dispersed
Car19g00541 Car-Chr19:6957358 Car17g00181 Car-Chr17:1115112 1.87E-14 dispersed
Car17g00181 Car-Chr17:1115112 Car01g01134 Car-Chr1:10505343 4.16E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g561 . . . . . . . . . Cmo17g00198 . . . . . . . . . . . . . . Cla06g00614 Cam06g0652 Cec06g0655 Cco06g0659 Clacu06g0640 Cmu06g0634 Cre06g1401 . . . . . Csa02g01121 Chy05g00378 . . . . . . . . . Sed09g0732 . . . Cma17g00206 . Car17g00181 Cpe12g00174 . Bhi12g02241 Tan06g2480 Cmetu05g1903 . . . Lcy13g0314 . . . . . . . Lsi09g01291 . . Cme05g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001019 1 1 1 3 1 3 1 3 3 2 2 3 4 2 3 1 3 2 2 3 2 4 3 2 3 2 2 3 9 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00181 Car_Chr17 FPKM 9.440671 8.562292 3.530058 3.528669 48.331264 48.695744 51.949184 0.250598 0.153684 0.219292