Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00202 ATGTCGCAACCCGTTTCGATTCCAACTACCGGATCCGATTTGGACGACCCCACCCTTCCCTGCTCCAACAATGGTGTAGAGGAAGAGGACCCATTGATCTCAGGTGTAGATGGAGAGTTGTCCTCTGATAGTAATAATGGTGATTCTGGATACTGGTTGAGTGGAGTCAAATTCTTTGGTGTAGATTTAACCCCTGATAATGTTGCTGTTGCAATGGTGTATTTTGTTCAAGGAGTTTTAGAACTTGCAAAGCTTGCTGTCAGTTTTTATTTAAAAGATGATTTGCATTTAGATCCTGCTGAGTCAGCTGTAATTTCTGGTTTCGCTGCATTGCCATGGCTGATCAAACCCCTCTATGGGTTTATTAGTGACTCTGTTCCTCTTTTTGGTTACCGAAGAAGGTCATACTTGATTTTATCAGGGCTTCTTGGTGCATTCTCATGGAGCTTTATGGCCATCCTTGTTAATAGCAAGTATGGTGCTGCTATGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGTGGTAGACTCGATGGTCGTAGAGAGGGCTCGTGGTGAATCACCAAGTATGTCCGGTTCTCTCCAGTCGCTATGCTGGGGATCATCTGCTTTTGGTGGTATTGTTAGTTCCTACTTTAGTGGCTCCCTGGTGGATTCTTATGGTGTAAGGTTTGTATTTGGAGTAACAGCCTTGTTACCTTTGATGACAGCAGCAGTTGCTGTTCTTGTTGAAGAAAAGCGTGTTTATGCCTCATTAAATGAGCCTAATCTTCCTAAAACTGGCTTGAGTTTTCTTGAAACCTCTAAACAGCACATATTTAATATATGGACTGCTATTAGACAGCCAAATATATATCTTCCCACACTATTCCTTTTTCTGTGGCAGGCAACGCCACAATCAGACTCGGCAATGTTCTTCTTTGTCACAAATAAACTCGGATTCACTGCCGAGTTTCTTGGACGAGTTAAGCTGGTTACTTCAGTTGCATCTTTGATTGGTGTAGGATTATACAATGGGTTTCTTAAAAATGTTGCGTTGAGGAAAATTTTTCTAATCATGTCAATAGTTGGTTCAGCTCTTGGGATGACACAGGTTTTTCTTATTACTGGATTGAATCGAAAGTTCGGCATAAGCGATGGTTGGTTTACTATTGGGGACTCTTTAATCATCACAGTTCTTGGTCAGGCTTCTTTCATGCCGGTTCTGGTGCTAGCAGCAAGACTATGTCCAGAGGGAATGGAAGCCACACTTTTTGCAACACTCATGTCAGTATTCAATGGAGGGAACCTTCTTGGAGGTCTGATAGGCGCTGCTTTGACTCAACTCTTTGGTATCACTAAAGATAGATTTAACAATTTAACCACTCTAGTAATCATATGCAATCTGAGCTCATTGCTACCCTTGCCCCTCCTTGGCCTTCTTCCAGAGGAAACTCCTGATCCCACCTCAAAACAGAGCTCAGATGTTGAAATGAAACCAATTTAA 1497 42.28 MSQPVSIPTTGSDLDDPTLPCSNNGVEEEDPLISGVDGELSSDSNNGDSGYWLSGVKFFGVDLTPDNVAVAMVYFVQGVLELAKLAVSFYLKDDLHLDPAESAVISGFAALPWLIKPLYGFISDSVPLFGYRRRSYLILSGLLGAFSWSFMAILVNSKYGAAMCILLGSLSVAFSDVVVDSMVVERARGESPSMSGSLQSLCWGSSAFGGIVSSYFSGSLVDSYGVRFVFGVTALLPLMTAAVAVLVEEKRVYASLNEPNLPKTGLSFLETSKQHIFNIWTAIRQPNIYLPTLFLFLWQATPQSDSAMFFFVTNKLGFTAEFLGRVKLVTSVASLIGVGLYNGFLKNVALRKIFLIMSIVGSALGMTQVFLITGLNRKFGISDGWFTIGDSLIITVLGQASFMPVLVLAARLCPEGMEATLFATLMSVFNGGNLLGGLIGAALTQLFGITKDRFNNLTTLVIICNLSSLLPLPLLGLLPEETPDPTSKQSSDVEMKPI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1203957 1208413 + Carg10029-RA Car17g00202 164574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00202 498 MobiDBLite consensus disorder prediction 1 19 - -
Car17g00202 498 CDD MFS_FBT 68 465 - -
Car17g00202 498 SUPERFAMILY MFS general substrate transporter 71 484 IPR036259 -
Car17g00202 498 Gene3D MFS general substrate transporter like domains 68 492 IPR036259 -
Car17g00202 498 MobiDBLite consensus disorder prediction 1 42 - -
Car17g00202 498 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 48 490 IPR039309 -
Car17g00202 498 Pfam BT1 family 77 481 IPR039309 -
Car17g00202 498 TIGRFAM fbt: folate/biopterin transporter 69 496 IPR004324 GO:0016021
Car17g00202 498 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1 CHLOROPLASTIC 48 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00202 - - - cmax:111499111 922.924
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01207 Car17g00202 CCT
Car14g01551 Car17g00202 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00330 Car-Chr2:2289095 Car17g00202 Car-Chr17:1203957 1.68E-35 dispersed
Car05g00289 Car-Chr5:1593343 Car17g00202 Car-Chr17:1203957 3.97E-52 dispersed
Car06g01207 Car-Chr6:8800628 Car17g00202 Car-Chr17:1203957 5.08E-44 dispersed
Car12g00352 Car-Chr12:2239564 Car17g00202 Car-Chr17:1203957 2.27E-53 dispersed
Car17g00202 Car-Chr17:1203957 Car20g00818 Car-Chr20:5267079 5.18E-41 dispersed
Car14g01551 Car-Chr14:12733914 Car17g00202 Car-Chr17:1203957 0 wgd
Car17g00202 Car-Chr17:1203957 Car06g01206 Car-Chr6:8796616 4.26E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g521 Blo01g00123 . . Bda08g00239 . . . Bma05g01105 . Cmo17g00216 Cma06g01399 Cma14g01717 Car06g01207 Car14g01551 Sed02g1305 Cpe08g00268 . Bhi01g00795 Tan10g0827 Cmetu06g2498 Lac12g2270 Hepe05g1561 . Lcy11g1554 Cla06g00593 Cam06g0632 Cec06g0635 Cco06g0638 Clacu06g0618 Cmu06g0611 Cre06g1379 . Cone15ag0834 . . Lsi05g01614 . . Cme06g00600 . . . . Bpe05g00897 . . . . Cmo06g01403 . . . . Car17g00202 Cpe12g00192 . Bhi12g01699 Tan06g2513 . . . . . Cla05g00533 Cam05g0584 Cec05g0594 Cco05g0592 Clacu05g0581 Cmu05g0551 Cre05g0620 Lsi09g01311 Csa03g01316 Chy06g00568 Cme01g01574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002132 1 3 1 1 1 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 2 2 2 2 2 5 6 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00202 Car_Chr17 FPKM 193.439346 215.404663 43.985104 41.788551 12.301272 12.639145 10.753131 27.18084 28.748556 25.735125