Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00207 ATGGCGGTTCCAGTAGCAAAAGCAGCGTCGCTCGTCCACATAGCTAGAGAATCTTCGGATATCCATCGCCTTTCTGAATTCTACAAAGAGATGTTTGGATTCGAGGAAATTGAGAGTCCAAATTTTGGAGAACTCAAGGTTATTTGGCTGAACCTTCCTTCTGCCTTTCAACTTCACCTCATCGAGAGAGACCCTAAATCCAAGCTACCTGAAGGTCCATGGAGCGCCACGTCACCCGTTGTCGATCCTAGCCATCTTCCCCGAGGTCACCACATCTGCTTCTCTGTTTCCAGTTCCAATTTCGACTCTGTCGTTCATTCTCTCAAGGAAAAGGGCATACAGACATTTGAGAAAACCCTACCAAATGGGAAGGTAAAGCAAGTCTTCTTCTTTGATCCAGATGGTAATGGATTGGAGATTGCAAGTCGGGAAGATTGA 438 46.12 MAVPVAKAASLVHIARESSDIHRLSEFYKEMFGFEEIESPNFGELKVIWLNLPSAFQLHLIERDPKSKLPEGPWSATSPVVDPSHLPRGHHICFSVSSSNFDSVVHSLKEKGIQTFEKTLPNGKVKQVFFFDPDGNGLEIASRED 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1267378 1269479 + Carg05411-RA Car17g00207 164579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00207 145 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 140 IPR004360 -
Car17g00207 145 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 10 143 IPR037523 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00207 - - - csv:101211159 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00207 Car-Chr17:1267378 Car08g00563 Car-Chr8:3722887 5.22E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g509 . Blo12g00333 Bda03g00880 . Bpe04g00825 . Bma04g00778 . . Cmo17g00217 . . . . . . . . . . . . . . Cla06g00590 Cam06g0629 Cec06g0632 Cco06g0635 Clacu06g0615 Cmu06g0608 Cre06g1376 . . . . . . . . . . . . . . . . Sed04g1910 . . . Cma17g00228 . Car17g00207 Cpe12g00193 . Bhi12g01702 Tan06g2516 Cmetu01g0171 Lac12g2273 Hepe03g0205 . Lcy13g0288 . . . . . . . Lsi09g01313 . . Cme01g01570
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012331 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00207 Car_Chr17 FPKM 17.903315 19.22798 24.631935 25.043877 14.492279 16.397799 13.71034 25.468596 25.334421 24.560266