Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00214 ATGGAGCTTTCTTCATCTCCCCGCCTCCTAAGCTCTCCCACTTCGCTGATCCTACTGAAACCCAAGGTTGGGTTTAGGGTTCCTCAGATTTCTTCCTCTCCCTTCCATTTTCACCCTTCTGTTTCATCTCTTAAACTCATTGGTAGAATGGAATTTAATAGGACAGTATGTTGTGCTTCTTCATCTGAAGGAAACGGCTCTCCGATGGTCCCTTCTTCAGGGTCTCGAGTGGGCGAAGTCAAAAGGGTCACCAAGGAAACAAATGTATCTGTCAAGATAAACCTGGATGGTTCTGGGATTGCGGATAGTAATACCGGGATTCCATTTCTTGATCATATGTTAGATCAACTTTCTTCACATGGGGTTTTTGATGTGCACGTAAGGGCCACGGGAGACATCCACATTGATGATCACCACACTAATGAAGATGTTGCCCTTGCCATTGGATCGGCTTTGCTGAATGCACTTGGTGATCGGAAAGGAATTTATCGGTTTGGAGACTTCTCGGCTCCTCTTGATGAAGCACTTATCCATGTCTCACTAGATTTATCTGGCCGGCCACATTTGAGTTATGATCTACAGATACCTACAGAGAGAGTTGGAACATATGACACCCAGTTGGTGGAGCATTTCTTCCAGTCTCTGGTGAATACTTCTGGTATGACTCTTCACATTCGACAGCTTGCTGGAAAGAATTCTCATCATATTATTGAAGCTACGTTCAAAGCATTTGCCAGGGCTCTTAGACAAGCAACCGAGTATGACCCACGCCGTCTTGGCACTGTGCCCAGTTCAAAAGGTGTTCTATCACGTACCTGA 819 45.42 MELSSSPRLLSSPTSLILLKPKVGFRVPQISSSPFHFHPSVSSLKLIGRMEFNRTVCCASSSEGNGSPMVPSSGSRVGEVKRVTKETNVSVKINLDGSGIADSNTGIPFLDHMLDQLSSHGVFDVHVRATGDIHIDDHHTNEDVALAIGSALLNALGDRKGIYRFGDFSAPLDEALIHVSLDLSGRPHLSYDLQIPTERVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRLGTVPSSKGVLSRT 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1294787 1298091 - Carg05418-RA Car17g00214 164586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00214 272 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 2. 230 242 IPR020565 GO:0000105|GO:0004424
Car17g00214 272 Hamap Imidazoleglycerol-phosphate dehydratase [hisB]. 76 269 IPR000807 GO:0000105|GO:0004424
Car17g00214 272 CDD IGPD 78 269 IPR000807 GO:0000105|GO:0004424
Car17g00214 272 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 253 IPR020568 -
Car17g00214 272 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 1. 135 148 IPR020565 GO:0000105|GO:0004424
Car17g00214 272 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE 1 271 - -
Car17g00214 272 SUPERFAMILY Ribosomal protein S5 domain 2-like 76 160 IPR020568 -
Car17g00214 272 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 164 272 IPR038494 -
Car17g00214 272 Pfam Imidazoleglycerol-phosphate dehydratase 105 248 IPR000807 GO:0000105|GO:0004424
Car17g00214 272 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 67 163 IPR038494 -
Car17g00214 272 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 1 271 IPR000807 GO:0000105|GO:0004424
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00214 K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] - csv:101211659 456.447
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g497 Blo01g00125 Blo12g00330 Bda03g00887 Bda08g00236 Bpe04g00831 . Bma04g00784 Bma05g01109 . Cmo17g00222 . . . . . . . . . . . . . . Cla06g00584 Cam06g0622 Cec06g0624 Cco06g0630 Clacu06g0609 Cmu06g0602 Cre06g1370 . . . . . . . . . . . . Bpe05g00902 . . . Sed01g0119 . . . Cma17g00235 . Car17g00214 Cpe12g00198 . Bhi12g01709 Tan06g2522 Cmetu01g0197 . Hepe03g0199 . Lcy13g0283 . . . . . . . Lsi09g01320 . . Cme01g01564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007721 2 1 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00214 Car_Chr17 FPKM 2.326007 1.91121 0.0 4.027959 0.0 0.0 3.62738 8.32153 0.0 13.010867