Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00217 ATGGCAAAATTTAGCCACTCCAAACTCAATCTCTTCTTCCTCCCGCTACTAATTTCCCTCCTGACCACGGCCGCCGCCCCGGCCGGCCGCCGTCACCCTCTGGACCCACTCTCACCGGACGAAATTGAACTCATACGATCACTCGTCGTCAACTCCACCACCAACGTCACGTTCCAATACGTCGCCCTCACCGATCCCGACAAGCAATATGTACTCTCATGGCTCTCAAACCCCAAAACCCCGCCGCCACCCCGACGTGCCACCGCCATCATCCGTTACAACAGTTCCACACACGAGATCCTCATAGACCTGGACAAAAAAGCTATAATCTCGAACCGGGTCTACTCCGGTCCAGCCTACTCTGTGTTCACATTAAGTGAGCTGTTAGACGCCGTCGCTCTTCCGCAGTCCCACCCACCGTTCGTGGCGGCCATGAACAAGAGAAGGCTGAAAGTGAAAGATGTAATTTGCGCGTGTTATAGCGTTGGGTGGTTCGGGGAAAAAATGAAGCAAAGAAGGATGGTAAAGCTTCAATGTTATTATTCAAATGGGAGTGTCAATTTGTACATGAGGCCAGTGGAAGGCGTGACCGTGACCGTCGATCTCGATCAGATGAAGATTATTGGGTTTCGAGATAGATACGAGGCTCCGGTGCCAAAAGCCGATGGAACTGAATACAGACCATCTATGCTCAAGCCGCCATTTTTGCCACCTTTGAACGAAGTTAAGATGGTGCAGCCGGAAGGACCCAGCTTCAAAGTCAACGATCACACAATTAGTTGGTCAAACTGGGAATTACACGTAGGATTCGACAAGAGAGCTGGACCAATCATATCGCTAGCATCAATCTATGACCTGGAAAAGCAAAAGCGCCGACAAGTAATGTACAAAGGTTTCATATCGGAGCTGTTCGTACCCTACATGGATTTAACCGAAGAATGGTATTACCGAACATTTTTCGACGCGGGCGAATACGGCTTGGGGCAGTACGCAGCGTCATTAGAGCCACTCAGAGACTGCCCGGAAAACGCAGTGTTTATGGACACGTACATCGCTGCCGGAGATGGGAGGCCGATGAAGATGGCCAACACTTTCTGTATATTCGAACGCCACGCCGGTGATATCATGTGGCGTCACACCGAGCGCGCCATTCCAAATAGAATCATTAGAGAGACGAGGGCGGAAGTGAGCTTGGTGGTGAGGATGGTGGCTACTGTGGCTAATTATGACTATGTTTTGGACTGGGAATTTAAGCAGAGCGGCTCCATTATCGCTACTGTTGGGTTAACGGGTTTGCTAGGAGTGAAGGCATCAAAATACACTCACAGAGACCAAATAGAGGAGGAAGTGTACGGCACGTTGATAGCCGAGAATACGATTGGGGTCAACCATGACCACTTCTTCACCTACTATCTCGATCTCGACGTCGACGGCGGCTCCAACTCGTTCGTTAAATCCAACCTGCGCACTGTCCGACCACCGAATACCGATAACCCTAGGAAGAGCTATTGGACGGTGGTCTCCGAGACGGCGAAAACAGAGGCGGATGCGAGGATCAAATTTGGGCGTCAAGAGGCGGAGTTGGTGGTTGTTAACCCTAATCGGAGGACTAGAATGGGGAATCCCGTCGGTTACCGTTTGATTCCGAAGTCGACGGCGGGTCCCCTTCTGAGTGTTGACGATTACCCCCAAATTAGGGCAGCGTTCACGAATTACAATGTGTGGAGAAAGCAAAAGAGGACGGTGAAGGTTCAGTGTTACTATTTGGATGGGAGTGTGAATTTGTACATGAGACCGGTGGAAGGCGTAACGGTGACCGTCGATCTCGATCAGATGAAGATTATTGGGTTTCGAGATAGATATGAGGCTCCGATTCCGAAGGCCGATGGAACCGATTACAGAGAATCGATGCTCAAGCCACCATTTTTGCCTCCTTTGAACGGAATAAAGATGAGAGCAGGACCAATCATATCGCTAGCATCAATCTACGACATCGAAAAGCAAAAGCACCGACAAGTACTATACAGAGCTTTCATATCGGAGCTGTTCGTACCCTACATGGATTTAACACAAGAATGGTCCTACCGGACGTTCTTCGACTCCGGCGAGTACGGCTTCGGGCAGTGCGCAGTGCCGTTAGAGCCACTCAGAGACTGCCCAGAAAACGCAGTGTTTATGGACACGTACATGGCGGCCGGAGATGGGAGGCCGGTAAAGATGCCCAACACGTTCTGTATCTTCGAACGCCACGCCGGTGATATCATGTGGCGGCACACGGAGGGCACGATTCCCAATAGAGTTGTCAGAGAGACAAGGCCGGAAGTTAGCTTGGTGGTGAGGATGGTGGCGGCTGTCGGCAACTATGATTATATTGTCGATTGGGAATTTAAGCAGAGCGGCTCCATTATTGCAAATGTCGGGTTAACGGGTTTACTGGAAGTAAGGGCATCAAAATACACTCACAGTGACCAAATAAAGGAGGAAGTGTACGGCGCGTTGATCTCCGAGAATACGATCGGCGTCCGCCATGACCACTTCCTCATCTACCATCTCGATCTCGACATCGACGGCGGCCTCAACTCCTTCGTCAAATCCAACCTCCGCACAGTCCGACTACCGAGCTCCGAATCCCCTAGGAAGAGCTATTGGACGGTGGTCTCCGAGACGGCGAAAACAGAGGCGGATGCGAGGATCAAATTCGGCAGCCAAGCGGCGGAGTTGGCGGTTGTTAATCCCAATCGGAGGACCAGATTGGGGAATCCCGTCGGGTACCGTCTGATTCCGAAGTCGGCGGCGGGTCCCCTTATGAGTGTTGACGATTACCCCCAAATTAGGGCAGCGTTCACGAATTACGATGTGTGGGTTACACCGTATAATAGCTCTGAGAAATGGGCCTCTGGGCCCTACACAGATCAGAGCCGTGGAGATGATACCTTGGCTACTTGGAGTCTAAGGAACAGGGAGATAGAGGAGAAGGACATAGTGATGTGGTACACCATGGGGTTTCATCACGTGCCTTGCCAAGAAGATTTCCCATTAATGCCAACGCTGAGCAGTGGGCTCATTATCAAAAAATCCCACGTGGGAAACCTTCAAAATCTCACATTTCACTTCGTTGACTTGGAGGAACCAGAGAAGAAACATGTTCTTTCCTGGCTCTCTTCCGGTGAACAAAACAGCCACACCCACCTCCGCCCCCCGCCGCGTCAAGCCAAGGTTGTGGTTCGTGCGGCGGATTCCACCCACGAGCTACTTGTAGACCTTGCCACACGGTCGGTCAAATCCGACCATGTCTATAACGGCCATGGATATCCTCCTTTCACTTTTCTCGAGCTCTTCCAAGCTAGTAAATTGCCTCTCAATTACCCAAAATTCAAAGCTTCCATTCAAAGAAGAGGCTTGAATTTGTCTCATGTTTCTTGCATCCCATTTACAGTCGGCTGGTATGGCGAGAAAACGACCAAAAGGGTTCTAAAAGCTGCGTGCTTTTACAGAGAAGGAACCAGCAATGTCTTCTCCCGGCCAATTGAAGGTATCATTACACTAATCGACGTCGATTCGATGAAAATCATCAACTATTCCGACAGATTCACCGCCCCTTTACCGGAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCACAAATCCACCAATCTCAACGCGACAAAAACCCATTTCACCGTCGAAGGCCATCGAGTAAAATGGGAAAATTGGGTCTTCCACGTGGGGTTCAACCCCAGAGCCGGCGTTATCATCTCGACAGCCTCCATTTTCGACGACGAGAAGAAGAAATTCCGACGAGTGCTTTACAGAGGACATATTTCAGAGACGTTTGTGCCGTATATGGATCCAACAAATGAATGGTTCTTCAGAACCTTCATGGATATCGGAGAATTTGGATTTGGGCGGTCGGCGGACACTCTCCAGCCGCTGATTGACTGCCCGGAATCCGCCGAGTATCTCGACGGGTACATGGCCGGCGCCGACGGGAGAGCGCAGAAGGTAACCAGAGCAATCTGTATCTTCGAACGCCAATCAGGGGACGTTTTATGGAGACATACAGAGATCAATATTCCTGGAAAAGTGATTAGACGAGGGGAGGCGGAGAGGAGCTTGGTGGTTCGAATGGTGGCAAATGTTGGGAACTATGACTATGTTCTTGACTGGGAATTCAAAAGGAGTGGCTCTATTAAAATTGGGATAGCTTTAACGGGGCTTTTGGAGGTGAAGGCCACACCGTACAGAAACAACGTAGATATAACGGAAGAAACATACGGAACTCTGATCGCCGCCAACACGGTGGCCGTCAACCACGACCACTTCCTAACCTACTACCTTGACCTCGACGTTGACGGCACCGACAATTCCTTCGTCAAAGCCAAGTTGACTACGCAAACGCCGACAACGAAGGTCAACGCCACGTCACCCCGGAAAAGTTACTGGAAAATTAACAGAGAGACCATCAAAACCGAAGCTGAAGCCAAGCTTCAGCTGAGCTCCGACCCAGCCGAGCTCTTGTTTGTAAACCCCAATAAGAAGACGAAGATTGGGAATCCGGTTGGCTACCGGCTCATCACCGGACAACCGGTTAATTCTTTATTGGCCGACGATGACTACCCTCAAATCAGAGCGGCTTACACCAAGTACCCATTATGGGTGACTCCTTATAACAAGTCGGAGAGATGGCCGGTCGGGTTTTACGCCGATCGGAGCCGTGGTGATGATGGCTTAGCTGTTTGGGCCAAAAGAAATAGGAGAATTGAGAATAGAGATATTGTTGTATGGTACACGGTGGGGTTCCATCACAGCCCTTGTCAAGAGGAGTTTCCGGCGATGACGGCTCTCCATGGCGGTTTCGAGCTCCGACCAGCTAATTACTTTGATAGAAATCCTTTACTTAAATAA 4911 50.27 MAKFSHSKLNLFFLPLLISLLTTAAAPAGRRHPLDPLSPDEIELIRSLVVNSTTNVTFQYVALTDPDKQYVLSWLSNPKTPPPPRRATAIIRYNSSTHEILIDLDKKAIISNRVYSGPAYSVFTLSELLDAVALPQSHPPFVAAMNKRRLKVKDVICACYSVGWFGEKMKQRRMVKLQCYYSNGSVNLYMRPVEGVTVTVDLDQMKIIGFRDRYEAPVPKADGTEYRPSMLKPPFLPPLNEVKMVQPEGPSFKVNDHTISWSNWELHVGFDKRAGPIISLASIYDLEKQKRRQVMYKGFISELFVPYMDLTEEWYYRTFFDAGEYGLGQYAASLEPLRDCPENAVFMDTYIAAGDGRPMKMANTFCIFERHAGDIMWRHTERAIPNRIIRETRAEVSLVVRMVATVANYDYVLDWEFKQSGSIIATVGLTGLLGVKASKYTHRDQIEEEVYGTLIAENTIGVNHDHFFTYYLDLDVDGGSNSFVKSNLRTVRPPNTDNPRKSYWTVVSETAKTEADARIKFGRQEAELVVVNPNRRTRMGNPVGYRLIPKSTAGPLLSVDDYPQIRAAFTNYNVWRKQKRTVKVQCYYLDGSVNLYMRPVEGVTVTVDLDQMKIIGFRDRYEAPIPKADGTDYRESMLKPPFLPPLNGIKMRAGPIISLASIYDIEKQKHRQVLYRAFISELFVPYMDLTQEWSYRTFFDSGEYGFGQCAVPLEPLRDCPENAVFMDTYMAAGDGRPVKMPNTFCIFERHAGDIMWRHTEGTIPNRVVRETRPEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHSDQIKEEVYGALISENTIGVRHDHFLIYHLDLDIDGGLNSFVKSNLRTVRLPSSESPRKSYWTVVSETAKTEADARIKFGSQAAELAVVNPNRRTRLGNPVGYRLIPKSAAGPLMSVDDYPQIRAAFTNYDVWVTPYNSSEKWASGPYTDQSRGDDTLATWSLRNREIEEKDIVMWYTMGFHHVPCQEDFPLMPTLSSGLIIKKSHVGNLQNLTFHFVDLEEPEKKHVLSWLSSGEQNSHTHLRPPPRQAKVVVRAADSTHELLVDLATRSVKSDHVYNGHGYPPFTFLELFQASKLPLNYPKFKASIQRRGLNLSHVSCIPFTVGWYGEKTTKRVLKAACFYREGTSNVFSRPIEGIITLIDVDSMKIINYSDRFTAPLPESEGTDYQSKKTEHKSTNLNATKTHFTVEGHRVKWENWVFHVGFNPRAGVIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWFFRTFMDIGEFGFGRSADTLQPLIDCPESAEYLDGYMAGADGRAQKVTRAICIFERQSGDVLWRHTEINIPGKVIRRGEAERSLVVRMVANVGNYDYVLDWEFKRSGSIKIGIALTGLLEVKATPYRNNVDITEETYGTLIAANTVAVNHDHFLTYYLDLDVDGTDNSFVKAKLTTQTPTTKVNATSPRKSYWKINRETIKTEAEAKLQLSSDPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPVGFYADRSRGDDGLAVWAKRNRRIENRDIVVWYTVGFHHSPCQEEFPAMTALHGGFELRPANYFDRNPLLK 1636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1316647 1329852 + Carg05421-RA Car17g00217 164589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00217 1636 Pfam Copper amine oxidase, enzyme domain 243 576 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 Pfam Copper amine oxidase, enzyme domain 649 1024 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 Pfam Copper amine oxidase, enzyme domain 1227 1634 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 Pfam Copper amine oxidase, N2 domain 1020 1097 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 Pfam Copper amine oxidase, N2 domain 32 114 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 ProSitePatterns Copper amine oxidase copper-binding site signature. 999 1012 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 Pfam Copper amine oxidase, N3 domain 123 214 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 Pfam Copper amine oxidase, N3 domain 1105 1198 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 Pfam Copper amine oxidase, N3 domain 573 621 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Car17g00217 1636 ProSitePatterns Copper amine oxidase topaquinone signature. 398 411 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00217 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222232 1095.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01028 Car17g00217 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01264 Car-Chr2:8490490 Car17g00217 Car-Chr17:1316647 1.63E-148 dispersed
Car11g00064 Car-Chr11:355024 Car17g00217 Car-Chr17:1316647 6.08E-24 dispersed
Car11g00065 Car-Chr11:359606 Car17g00217 Car-Chr17:1316647 1.41E-19 transposed
Car17g00217 Car-Chr17:1316647 Car08g01028 Car-Chr8:7014287 1.14E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00217 Car_Chr17 FPKM 0.320988 0.434183 0.0 0.246621 0.0 0.959401 0.0 0.0 0.0 0.240087