Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00218 ATGGCTTCTTCTTTGGATTGCCTCCTTTTCGATTTGGATGACACTCTGTACTCTTTCAGCACTGGAATTGCAGCTGCTTGCAAGAAAAACATCGAAGATTTTCTCATCGAGAAATTTGGATTCCCGAAAACCCAAGCTCCGATTCTCCGGACAGAGCTTTTTAAAACATACGGCAGCACTCTGGCTGGTTTGCGAGCATTGGGCTATGACATTCATGCCGATGATTACCATGATTTCGTGCACGGGAGGCTGCCGTACGACCGGATCAAACAGGACTTTCAGCTCCGGCGTCTCTTACTGACCATTCCGCAAAGAAAAATCATATTCACGAATTCCGACATGAAGCATGCGACCGAAGTGCTCGGTCGATTGGGCTTAGAGGGTTGTTTCGAGAAGATCATATGTTTCGAGACGATGAATCCAAATCTTCCGACGGCGACTCGGCCGAACGAGTTTCCGGTCGTTCTCAAGCCGTCGATGGACGCCATGAGAATCGCTCTAGACGCCGCCGACATTGACCCCCGTCGTACGCTGTTCCTCGACGACAGCGTCCGCAACATCGCCGCCGGAAAAGCCATCGGCCTCCGTACCGTTCTGGTTGGAAAATCATCGAAGAGTAAGGAAGCGGATTATGCGATGGAGACGGTGCATAATTTGGCACAAATAGTTCCAGAGATACGGGTAGCTATAGAATCAAACAGTGGCAATGAAATGATCAATCGAAGTCGGAGCGAGGTTGATTTGGTTCTCATGGCAACAACTGTCGGTGCTTAG 774 49.61 MASSLDCLLFDLDDTLYSFSTGIAAACKKNIEDFLIEKFGFPKTQAPILRTELFKTYGSTLAGLRALGYDIHADDYHDFVHGRLPYDRIKQDFQLRRLLLTIPQRKIIFTNSDMKHATEVLGRLGLEGCFEKIICFETMNPNLPTATRPNEFPVVLKPSMDAMRIALDAADIDPRRTLFLDDSVRNIAAGKAIGLRTVLVGKSSKSKEADYAMETVHNLAQIVPEIRVAIESNSGNEMINRSRSEVDLVLMATTVGA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1333815 1336038 + Carg05422-RA Car17g00218 164590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00218 257 Pfam Haloacid dehalogenase-like hydrolase 8 200 IPR041492 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00218 K07025 K07025; putative hydrolase of the HAD superfamily - csv:101214793 421.779
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01029 Car17g00218 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00114 Car-Chr14:560418 Car17g00218 Car-Chr17:1333815 1.23E-77 dispersed
Car17g00218 Car-Chr17:1333815 Car08g01029 Car-Chr8:7023476 1.44E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g478 . . Bda03g00891 . Bpe04g00835 . Bma04g00789 . Cmo08g01123 Cmo17g00228 . . . . . . . . . . . . . . Cla06g00575 Cam06g0614 Cec06g0615 Cco06g0621 Clacu06g0601 Cmu06g0594 Cre06g1362 Cone14ag0844 . . . . . . . . . . . . . . . . . . . Cma17g00241 Car08g01029 Car17g00218 Cpe12g00202 Cpe17g00144 Bhi12g01720 . . . . . . . . . . . . . Lsi09g01328 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003737 1 2 0 1 1 2 2 2 2 1 2 2 1 1 1 2 2 1 2 2 1 1 1 1 1 2 1 6 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00218 Car_Chr17 FPKM 193.174973 208.244095 175.463242 175.675903 229.118835 244.096085 243.550781 230.240265 237.706329 237.332382