Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00220 ATGGATAGGAACAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCCTCCAACGGGCTCTCTAGACGGAGATACAGGAGTAGTAGTCTCCGTGACTCTCCAGAGGATGATGGACAGTTGGAGTTACAGGATACCGTAAGATTAAGAGATCGAGGTAGCGGGAAGAAAGATCGAGATCGAGATAGGGATAGAGACAGAGATCGAGACCGTGAAAGAGATCGGCTAAGTAGGAGCAAGAGGAGGAGAGCCGATAGATTGATTCATGGTGGTAGCAATAGGGAGGATGGAGGTGAAGATAGTTCTGAGGAGAGTGTAAATGACGAAGAGGATGAAGAAGACGACGATGGCGGTGGTGGTGGTGGAGCGTCCGTCAGAATGCTTCCGCCAAATCCGGCGGCGATTTTGAGCCATCGGAAGACTTTTCCACCGGCGAAGAGTTTCAGAGCAGCACCGTCGTGGAAAGCAGCCGATGAAATGATTGGTGTGTCGGTGCCGAGAAAAGCCCGGTCAGCCTCGACGAAGCGGTCTCATGAATGTTGGCCAGCAGCGACGGGCGGCGGAACGGCTATAGAGGCCATTAACCGGCAGGCTTCAACATCGCCAGTGAGGCCAAGTCTTACAGCAATGGCGGCGACGTTTCAGCCTCCAGCCTCGCCTTCTTCTTCCAATGCTCCGGTGAGGAAGAAGCTGAAGCAAACCGGACCTAAACTCCGGCCGCTCAAATCCTCCTCAAAACTATCATCCACGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTCTTGTACGGTATGATGAGACAGCCACAAGGTCCTCCGAAACAAGAACCCTCTACTACTGATTCCATGAAGTTCGATTCCAAATCAACCACTGATGCCAAATCCAGAGTTTCATCGCCGATTTCCAACTCTTCTGATTTGCCTACCCCTTCCATTTTGCCTCAAAATTCCAGTTCTTCTGTCACTCCGATATCAACCACAGCACCCAAGAGGAAAAGACCGCGTCCTGTGAAGTACGACGACGAGAACACCGCCACCTTCAGCCTTCGGAATAGCCCCATTTCATCAAGAGCCAAAGCTGAGGCTGATCAGCCGCCTACCAACGCCGAGATCCCTTCATCAAATGTGGACAAAGTTTCAGGATCTGCAGGTGAAAATGTAGTTTCGAATGAATCTGCTAATTCTCTGGCTTTACCGGAGTCCCGTCCAGAATCTATGAAGGTGGACACAACCAGTGCCATGCCCAATTCCAAGCCATTGACTGAAGAATCAGACGGCAAAGATTTGGGTTCTAGCAAGGAAGAACCCCAATCTCCCCTGAAGGAATCAAATGGCCCTAGATTAGAAGATAAGCGAGAGGATATGACAGCGACCAAATCAAATTCATCAACATTCGATGCTGAGAACCAGCGGGATGATAAGTACAAGATAGATCTAATGGCTCCTCCACCATTACGAGCTTCTCCGGAAAGAGAGGGTGAGATTGATTTTGTGGCCGTAGATGCTAAACCTATGGTCATAGATGCAGACACGGAAATGAAGCCTCTGATAAATGAAGACGACAAAGGAACAATCAGACTTGGGGGGGCTAAAGAGGCGTTGAACGTGGAGTCTAAGGCTATACCAGCTGAAGAAGCTGATTCAAAGAATCCCATTGCTTGCAAAGATAGGAATTTTGACCTTCAGCTTGATTTAGTTAAGACGATTGATAGAGATGGCCCCAACAAGCTCCACCAGCATGTTCAGAAACAGCCGCCGCAACCCAGCTCGGAAAAGGCTGGATCTGCCGTACAAGCGGGCTCTCTTCCTTTGCCCATGTCTCTACCCGGTTGGCCAAGTGGGCTGCCTCCTATGGGATATGTGGCACCACTACCAGGAGTTGTGTCTGTGGATGGAAGCGCTTTGCCTGCTGCTGCCATGCAGCCGCCAAATTTCCTTTTTCCTCAACCTCGGCCGAAGAGGTGTGCTACACACTTCTACATTGCTCGGAATATATTGTATCATCAACAAATTGCGAGGATGAATCCATTCTGGCCAGCAGCAGCAGGTTCTGCTTCCTTGTTTGGGGCCAAGCATGGTAATCTCAGCATCGTGCCCTCTACAGATTTGCAAGGAAATCTTCCGAAAAGCGGGGTAAATGCAATGCAGGATAAGGGACAGAGCCTCGGAATGTTTACGGGTCATGCTGGGAAGGATAGGGGCTCTCCAGCTGTTAACGTTGTCGATGCCTCTCAGAGAAAGCAAATTTTGCTTCAGCAAGGTCTACCGCCGGGAGCACCTAGTAATATCCTGCATGGCCCTGCTTTCATTCTGCCTCTGAGCCAGCAGCAACAGGCAGCTGTAGCCACATCGGTTCGGCCAGTTTCTGTGAAGTCTCCTCCTCCTAGTGGGAATGCCAACGGCAGCGTGGCTTCAAATGCTTCAAATCCAGCCTCTGTTAGTACCGCACCCGCTGCAGCGATGAGTTTCAACTATTCAGGTGTGCCTGGCAATGAACCACAGTATTTAGCCATTTTGCAGAACAATGGATATACATACCCAATTCCAGCACACGTAGGAGCACCGCCTGCATATAGAGGAAGCCACGCTCATTCAATGCCGTTTTTCAACGGGTCGTTTTATTCTTCACAAATGCTTCATCCTTCACAGCTTCAGCAGCAACCGCCACCTCAGTCTCACCCTAATCAACAGGGACTTCAAAATGCTAATACTGCCAATGGTTCCTCATCGTCTCAGAAGAACATGTCTAATCAGCAGCAGAGGCCACATGGGAGCAGTTTCAGTGGGAACTTTCAAGGCTTTCCTGCATCCAGAAATCAGCCATCTCAATCACAGCACCCACAGCAGCAGCAGAACCACGCCTCGCATCAAACAAGGCAACACGAGTCTGAAATCGGCGGTGAAGATAGCCCGTCCACTGCTGATAGTCGAGTGAATCTTGCTAATCTGAGTGTCTACGGTCCAAATTTTCCAATGCCAATGCATACTCCTAATTTTGCTATGATGCCTCCTGCATCGATGGTGGCCGCAGGTGGTGCACCTATTGACAAGAAACAGCAGCCTCAACAACAGTCACAGGGTTCAAAAGGTCTGGAACAATCTCAAACTATTCCTTTGTCTTTTGCTCCTCCCAACGGGGCGCCCTCTGCTCCTGGGCTTGACCTTTCATCCTTATCACCAAATCATCCTATTTTTCAAAGTCTTCCTGAGATCACCAGGCAAGGGTATCATCAGATTATGGCCGCTGCCGCCGCTCAGGTTGCTCAGCAGAAAAAGAATTATCGTGTAGCAGAAGAAGGAAAAACCACACATTCATCGGTTGGGGAGGATGAGAGAAAAAATATGTCTGTTAAGGCACCTCCAACTGTTGGCCAGTCCATTGCCTTCTCTAGAACTGATTTAGCTGAGACATTAATGTCCTCAATGCCAGCTGGGGCTGCTGTTGATAGCTCTGCAAGAACTCTCAAACTTGGTTCTACTGCTAGAGCTTCAGGTTCCGTTATGCCGTCTGGGATGAGCACTGTAAATATGTGTGGTTCCCAGCATCAACTACAGCGAAATCAGCAGCAGCAGCAGCAGCAACAGATGATTCAGCTTCAAAAGCAGCAGCAATATGCAGCTGCTGCAGCTGCGGTAGCGAGGACGAAAACATCAGCAACAAGTAATGGCAATGTTTATGCCGAGCACCCTCCTGCGTCTTCGATGGCTGCGAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCCAAGTAACAGCAATAGTCCTGCTCAATCTCCTCAGTGGAAAAATTCTGTAAGAACCACTTCATCTCAGGTACCAACCCCCCCTCATTCTTCGTCTAATACATCATCTATCAAAAATCTTCCCCAACAGCAGCAGCAGGGGCGTCCACAGCAAAATCACTCTCAGATTTCTTTTGCGGCGAGCTCAAAATCTACAGCACAATCACAAGGACAGCAACCTGCAAGCAGTAATCATCCGCAATCGCCCGGAATGATTGGCTCACCAACTAATTCTTCACTCTCAAAGGGTGCCGGTGGAAGCCCACGGACAGCTACTTCGGGTTCCATGAGTCACAAAGTTGGTCAATCATCTTCTTTATCATCACAGCAGACAAAGAATCCTACATCTATGCCCCCTCAGAAGTTATCTCCTGCTGGTGGGCGAAACGTTACGTCAATTCTTGGCAATAATCAAATGACCTCTTCAAGTTCTGGAACTAAATTATCCCAACAGTCGCAGCAGCAGCAACAGCAACAACAGCAACAGCAACATTTGTCGAAGCAATCATTGCAGCAAGCCCAGGTGCTCTTCCCTTACATGCAGGCCCAAGTTTCCCATTCAAGTAGCAGTCCAACTGCTTCACCTTCAAGCGGTTATTATCCAAGGCGTCGTCCTGAGCAGCAATCACAATTGCAGGGCTCAGGAGGAACATCCTCAAATGGAATGCTATCCCTATGCCACCCTGTTACACTCGGAGGTAACAGCACTACTGATCCAGCTAAGGCCGTTGCTGCTGCGGCTGCTGCCACAGCCAACAATATGAAAGGCGGTAGCTTATCCACACAAGCCATTCTCCATCCTGCTCAGTTTGCTGCTGCACAGTCCTCCGGTAATCCTCATCAACTTGTACCTGCAGGTTTTCCTTACGTGCATACCGCTGCAGTGCAAGTGAAATCAACAGAGCAGAAACAACCTGCGGGTGGGTAG 4719 49.42 MDRNREARRTTTNMAASNGLSRRRYRSSSLRDSPEDDGQLELQDTVRLRDRGSGKKDRDRDRDRDRDRDRERDRLSRSKRRRADRLIHGGSNREDGGEDSSEESVNDEEDEEDDDGGGGGGASVRMLPPNPAAILSHRKTFPPAKSFRAAPSWKAADEMIGVSVPRKARSASTKRSHECWPAATGGGTAIEAINRQASTSPVRPSLTAMAATFQPPASPSSSNAPVRKKLKQTGPKLRPLKSSSKLSSTAQDEIEIEIAEVLYGMMRQPQGPPKQEPSTTDSMKFDSKSTTDAKSRVSSPISNSSDLPTPSILPQNSSSSVTPISTTAPKRKRPRPVKYDDENTATFSLRNSPISSRAKAEADQPPTNAEIPSSNVDKVSGSAGENVVSNESANSLALPESRPESMKVDTTSAMPNSKPLTEESDGKDLGSSKEEPQSPLKESNGPRLEDKREDMTATKSNSSTFDAENQRDDKYKIDLMAPPPLRASPEREGEIDFVAVDAKPMVIDADTEMKPLINEDDKGTIRLGGAKEALNVESKAIPAEEADSKNPIACKDRNFDLQLDLVKTIDRDGPNKLHQHVQKQPPQPSSEKAGSAVQAGSLPLPMSLPGWPSGLPPMGYVAPLPGVVSVDGSALPAAAMQPPNFLFPQPRPKRCATHFYIARNILYHQQIARMNPFWPAAAGSASLFGAKHGNLSIVPSTDLQGNLPKSGVNAMQDKGQSLGMFTGHAGKDRGSPAVNVVDASQRKQILLQQGLPPGAPSNILHGPAFILPLSQQQQAAVATSVRPVSVKSPPPSGNANGSVASNASNPASVSTAPAAAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPAYRGSHAHSMPFFNGSFYSSQMLHPSQLQQQPPPQSHPNQQGLQNANTANGSSSSQKNMSNQQQRPHGSSFSGNFQGFPASRNQPSQSQHPQQQQNHASHQTRQHESEIGGEDSPSTADSRVNLANLSVYGPNFPMPMHTPNFAMMPPASMVAAGGAPIDKKQQPQQQSQGSKGLEQSQTIPLSFAPPNGAPSAPGLDLSSLSPNHPIFQSLPEITRQGYHQIMAAAAAQVAQQKKNYRVAEEGKTTHSSVGEDERKNMSVKAPPTVGQSIAFSRTDLAETLMSSMPAGAAVDSSARTLKLGSTARASGSVMPSGMSTVNMCGSQHQLQRNQQQQQQQQMIQLQKQQQYAAAAAAVARTKTSATSNGNVYAEHPPASSMAAKFPNALSSFSQNLVPSNSNSPAQSPQWKNSVRTTSSQVPTPPHSSSNTSSIKNLPQQQQQGRPQQNHSQISFAASSKSTAQSQGQQPASSNHPQSPGMIGSPTNSSLSKGAGGSPRTATSGSMSHKVGQSSSLSSQQTKNPTSMPPQKLSPAGGRNVTSILGNNQMTSSSSGTKLSQQSQQQQQQQQQQQHLSKQSLQQAQVLFPYMQAQVSHSSSSPTASPSSGYYPRRRPEQQSQLQGSGGTSSNGMLSLCHPVTLGGNSTTDPAKAVAAAAAATANNMKGGSLSTQAILHPAQFAAAQSSGNPHQLVPAGFPYVHTAAVQVKSTEQKQPAGG 1572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1354369 1360279 - Carg05424-RA Car17g00220 164592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00220 1572 MobiDBLite consensus disorder prediction 1248 1430 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 879 956 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 272 327 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 784 812 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 211 228 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 25 99 - -
Car17g00220 1572 Coils Coil 1182 1202 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 575 598 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 580 596 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 1017 1042 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 1098 1119 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 1010 1058 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 1446 1487 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 100 117 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 1 142 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 1098 1116 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 263 493 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 421 435 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 211 251 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 344 419 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 879 975 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 10 24 - -
Car17g00220 1572 MobiDBLite consensus disorder prediction 237 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00220 - - - cpep:111807464 2600.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01031 Car17g00220 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00220 Car-Chr17:1354369 Car17g01110 Car-Chr17:8580107 9.79E-114 wgd
Car17g00220 Car-Chr17:1354369 Car08g01031 Car-Chr8:7045674 0 wgd
Car17g00220 Car-Chr17:1354369 Car08g00313 Car-Chr8:2000375 5.10E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00220 Car_Chr17 FPKM 0.0 0.0 1.025326 1.290543 2.488281 3.085418 2.541688 0.325775 0.240172 0.101689