Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00232 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCGCCCGACGGTGACGACGGTGGGAAGTTCGGTGGCCTCGTCGAGAGGATTGGCTCCAGCATTCGAAAATCTCGAAATGGACTGTTTTCTAAGCATTCAGTGCGGGCTTTGCCACCGGTTGCGAAAGAAGATGCGCCTTCGATTTGGTGGCGGAAGGGAGAGTTGATTGGATGCGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTATTGCAATCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCGCAGGCTCACATACGGGAGCTGGAGGAGGAAGTGAAGCTTTTGAAGAACCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAATCTTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTGTTAGGGAAATTTGGGTCTTTCCCTGAGTCTGTTATGAAAACCTACACGAAGCAGCTATTATTGGGACTTGAGTACCTTCATAAGAACGGCATTATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGCATTAAACTTGCTGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCGTATTGGATGGCTCCTGAAGTTATTCTCCAGACCGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACGGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCACATAGGGAATACTAAGTCCCATCCACCCATTCCTGAGCATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGAACCTCATGCACCAGTCCGTGCCTCTTCTTTGGAATCTGGGAAGCAGATGGCTGATTCTAGGCTGAATTCTAATGATATAACAAAGTCTATAATCCAACGTTCAACTTGTGAGGGCTTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGAGGTACGGTCCAACTGGGGATCGAGCAATTTTGAGGACGACATGTGCCAGATAGATGATAAAGATCTGTTTGCTAGTTCATCGATAAAGTACAAATCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCCATGTGTGAACCCACTGATGACTGGCCATGTAAATTGGATGAGAGCTCAGAGCTGAGAGGCAATTTAATGGAATTGTCTGGTATTCAAACTGGCCAGGAATCTACTAGCAAGGGGAATGACTTCACTTTTCCATGTGGTCAATCAACAGCTGAGGATGATGAAGAGGTTACAGACTCGAAGATTCAAGCCTTCCTGGATGAGAAGGCTTTGGAACTGAAGAAGCTACAAACACCTTTATATGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCTTTAGGAGCAGGTGGCACTGAGAATAGCAAGAGTGTATCTAATTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCCAGCATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCGCCTCAAATTGGGGAATGGAACAGATTGCTTCATACACAGCCAGAGTCTTGCACACCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAGCGAGAAATGATGCGGCGCGGAACTGTAGGAGCAATTCACTAA 1938 44.12 MQDFFGSVRRSLVFLAPDGDDGGKFGGLVERIGSSIRKSRNGLFSKHSVRALPPVAKEDAPSIWWRKGELIGCGAFGRVYMGMNLDSGELIAIKQVSIAANSASREKAQAHIRELEEEVKLLKNLSHPNIVRYLGTAREESSLNILLEFVPGGSISSLLGKFGSFPESVMKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPHAPVRASSLESGKQMADSRLNSNDITKSIIQRSTCEGLKDICEMGSLRCSSVFSGNYEVRSNWGSSNFEDDMCQIDDKDLFASSSIKYKSIISSNDLNKSFNPMCEPTDDWPCKLDESSELRGNLMELSGIQTGQESTSKGNDFTFPCGQSTAEDDEEVTDSKIQAFLDEKALELKKLQTPLYEEFRSTVNAANALGAGGTENSKSVSNFLKLPPKCGSPSKLRGKRLSSIDAGNCSSRQSRIKQASILQDRALQEIQSPQIGEWNRLLHTQPESCTPSFSERQRKWKEELEEELKRKREMMRRGTVGAIH 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1433358 1439606 - Carg05438-RA Car17g00232 164604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00232 645 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00232 645 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Car17g00232 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Car17g00232 645 Coils Coil 98 125 - -
Car17g00232 645 Coils Coil 615 638 - -
Car17g00232 645 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00231 Car-Chr1:1259071 Car17g00232 Car-Chr17:1433358 2.54E-73 dispersed
Car05g01071 Car-Chr5:10323691 Car17g00232 Car-Chr17:1433358 0 dispersed
Car14g00878 Car-Chr14:5195838 Car17g00232 Car-Chr17:1433358 5.32E-48 dispersed
Car17g00232 Car-Chr17:1433358 Car03g00988 Car-Chr3:7617163 2.07E-89 dispersed
Car17g00232 Car-Chr17:1433358 Car12g01043 Car-Chr12:10280423 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89466 PF00069 Pkinase 3.00E-73 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00232 - K20606 csv:101217427 1147.11