Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00234 ATGGCGAAAGGCCATCTCTGTTTTCTTCTCCCATTGCTACTTGCTTCCATCTTCGTCTCCAATCACCCTGTCAGATGCGACTATGATGATCTTCATAGAGGCATCAACAGATATCGTGCATCCTTGAACTTGCCAGCGCTCGTCGAGATTGACAACGCGGAGTGCCTTGCTGATGAAATAGCTGAGAAATTCAAGAATCAACCTTGTACGAACACCACAGGTTCCAACACAATATCAGGCACTGAACCTCAGTTTGCTGACTTTCCAAACTTATTAGCCAAATGCCATTTGAATGTCTCCAACACAAGAGATGGAACCATAATGCCTGCCTGTGTTCCGAACCGTGTCGCTGATCTTGTTCTTACAAACTTCACAAAATCTCAGTACTCAGGTAAACTTAACGATACCAAGTACACGGGAATCGGCATCGGTACTGAAGACGATTGGGTTGTCGTTATTCTTACCACCAGCACAGCAGAAGGAAGTTTTGCGTCAGCAGTAGCATCAAAGAACACAGCCACTCTGGTTTCTCAGATTGGTTTGTGCTCTCAGTTGCTGTTCTTGATGCTGTCTTCTGTCTTACTGTTGTAG 591 45.18 MAKGHLCFLLPLLLASIFVSNHPVRCDYDDLHRGINRYRASLNLPALVEIDNAECLADEIAEKFKNQPCTNTTGSNTISGTEPQFADFPNLLAKCHLNVSNTRDGTIMPACVPNRVADLVLTNFTKSQYSGKLNDTKYTGIGIGTEDDWVVVILTTSTAEGSFASAVASKNTATLVSQIGLCSQLLFLMLSSVLLL 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1444516 1446885 - Carg05440-RA Car17g00234 164606

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00234 - - - csv:101217896 316.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01040 Car17g00234 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00943 Car-Chr10:7534022 Car17g00234 Car-Chr17:1444516 3.82E-32 dispersed
Car12g01048 Car-Chr12:10321601 Car17g00234 Car-Chr17:1444516 7.42E-36 dispersed
Car12g01050 Car-Chr12:10326652 Car17g00234 Car-Chr17:1444516 1.54E-21 dispersed
Car12g01051 Car-Chr12:10327932 Car17g00234 Car-Chr17:1444516 1.46E-10 dispersed
Car17g00234 Car-Chr17:1444516 Car08g01040 Car-Chr8:7113591 1.30E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g452 . . . . . Bpe14g01311 . . . Cmo17g00247 . . . . . . . . . . . . . . Cla06g00556 Cam06g0597 Cec06g0595 Cco06g0602 Clacu06g0583 Cmu06g0578 Cre06g1344 . . Cone7ag0227 Cone4ag0217 . . . . . . . . . . . . . . . . Cma17g00260 Car08g01040 Car17g00234 Cpe12g00216 Cpe17g00133 Bhi12g01817 . . . . . . . . . . . . . Lsi09g01343 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008559 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00234 Car_Chr17 FPKM 6.960142 5.592095 12.302588 12.959257 31.161648 33.497406 31.137054 10.555243 11.517539 11.342048