Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00246 ATGTTACTTTGGGCTTTGCCAAGAAATCTGGCGAACCTTGGAGGATTGAGGGCTCGGTTGTCATTGAAGCATTCCGTTTCTGATCACAACGACGAGGAGGAGGAGTGCCGGCCTTGGCGTCGCAGGCTTTTTATGGCTTTCACATGGCGCTCCGCCCTCAAGATTACCTTCTTACTTATACTTGTTGCTGCTGCAGTGATTGCTTGTTTCACCCTCCCAATCGAGAAGGCTGGAAGATTTATGACGAATTACTCGTTTCTGATATTTAATTTAATGTCATATGATTTGTATCGAATCGACCACATATTTGAAAACTTAACGCCGTTGCAGATTCTGAAGGACTTTTTACTATGGGTTGATCAAGATCTTGGCGCTTGGGGTCCGCTTGTGCTGTCTCTTGCATACATTCCTTTGACAGTGCTGGCAGTTCCTGCCTCAATACTTACGCTTGGTGGTGGTTATCTATTTGGATTACCTGTGGGCTTTGTTGCTGATTCCATTGGTGCAACTGTTGGGGCTGGGGCAGCTTTCCTTCTTGGACGAACTATTGGGAAGTCATTTGTTGTTTCCAAGCTGAAGGATTATCCGCAATTTCATTCGGTTGCAATTGCTATTAATCGGTCTGGATTTAAGATAGTATTGCTGCTCCGGCTTGTCCCTTTACTTCCATTTAACATGTTGAATTACCTATTGTCCGTGACTCCTGTTTCACTAGGGGAATACATGTTGGCTTCATGGTTGGGAATGATGCCCATCACCCTTGCACTAGTGTATGTTGGAACCACACTCAAAGATCTTTCTGATGTTACGCATGGTTGGGGAGAATTGTCGAAGACTCGTTTGGCATTCATTATATTGGGTCTTGTGGTATCTGCGCTTCTGGCGTACTGCATCACCAGAGTTGCTAAGGCTGCTTTGGAAAAAGCTTTGGCCGAGAATGGAGATGCTGTTGATTATTTGGGTCTCTCCCCGCGTCTACCCGTTGCAGCTGAAGCGCCTGTTGATCTTAACCTGCCCCTCATAATCAAGATTGACTCTCCTCAAGATGATCGTATATGA 1059 45.51 MLLWALPRNLANLGGLRARLSLKHSVSDHNDEEEECRPWRRRLFMAFTWRSALKITFLLILVAAAVIACFTLPIEKAGRFMTNYSFLIFNLMSYDLYRIDHIFENLTPLQILKDFLLWVDQDLGAWGPLVLSLAYIPLTVLAVPASILTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGKSFVVSKLKDYPQFHSVAIAINRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVSLGEYMLASWLGMMPITLALVYVGTTLKDLSDVTHGWGELSKTRLAFIILGLVVSALLAYCITRVAKAALEKALAENGDAVDYLGLSPRLPVAAEAPVDLNLPLIIKIDSPQDDRI 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1507129 1511642 - Carg05452-RA Car17g00246 164618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00246 352 Pfam SNARE associated Golgi protein 143 261 IPR032816 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00246 - - - csv:101204495 459.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01238 Car17g00246 CCT
Car06g01238 Car17g00246 ECH
Car08g01047 Car17g00246 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01119 Car-Chr9:11576095 Car17g00246 Car-Chr17:1507129 1.60E-17 dispersed
Car16g00981 Car-Chr16:8328889 Car17g00246 Car-Chr17:1507129 4.35E-06 dispersed
Car17g00246 Car-Chr17:1507129 Car06g00655 Car-Chr6:3919122 4.16E-11 dispersed
Car17g00246 Car-Chr17:1507129 Car06g01238 Car-Chr6:8946058 3.34E-104 wgd
Car17g00246 Car-Chr17:1507129 Car08g01047 Car-Chr8:7155211 8.54E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g430 . . . Bda08g00391 . . . Bma05g00944 Cmo08g01142 Cmo17g00258 Cma06g01436 . Car06g01238 . Sed12g0891 Cpe08g00239 . Bhi01g00861 Tan10g0891 Cmetu06g1295 Lac12g2330 Hepe05g1520 . Lcy11g1504 Cla06g00545 Cam06g0588 Cec06g0585 Cco06g0593 Clacu06g0575 Cmu06g0569 Cre06g1335 Cone14ag0821 . . Cone4ag0205 Lsi05g01458 . Chy11g01431 Cme06g00648 . . . . Bpe05g00755 . . . . Cmo06g01439 . Cma08g01169 Cma17g00271 Car08g01047 Car17g00246 Cpe12g00224 Cpe17g00125 Bhi12g01799 . . . . . . Cla05g00580 Cam05g0638 Cec05g0647 Cco05g0642 Clacu05g0632 Cmu05g0600 Cre05g0669 Lsi09g01357 Csa03g01374 Chy06g00617 Cme11g01936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001200 4 7 2 5 2 2 3 2 2 2 1 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 2 5 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00246 Car_Chr17 FPKM 21.697239 25.972889 25.222015 27.118921 30.534712 31.079832 29.58489 28.429457 25.937023 22.901762