Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00253 ATGCAGTCGTCTATAGACGTGGATTTCTTCACTGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTGTGCTCTGCATATGATACTCACATTGGGGAGAAAGTTGCAATTAAGAAGATCAACGACATCTTTGAGCATGTCTCCGATGCAACTCGGATTCTTCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTATTACCTCCATCTAGAAGAGAATTCAAGGACATTTATGTCGTGTTTGAGCTCATGGAATCTGATCTACACCAAGTTATCAAAGCAAACGATGATTTGACTCCAGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGAGGCTTGAAATATATACACACAGCTAATGTCTTCCACCGGGACCTAAAACCCAAAAATATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGCGACTTTGGTCTGGCAAGAGTTGCTTTTAATGACACCCCTACTGCTATTTTCTGGACAGATTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTGTGTGGTTCCTTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGTTGCATCTTTGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAACGTCGTCCACCAATTAGACTTGATGACAGATTTTCTGGGAACCCCAAATGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATACTTGAGCAGTATGCGAAAGAAGAAGCCGGTTCCTTTCTCCCAGAAGTTTCCTCACGCAGATCCACTCGCACTTCGCTTGTTGGAAAGAATGTTAGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTAACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGGGAGATTCTCGAGTACCATCCAAAGATGTTGAAGGAATTCTTAGATGGATCTGAACCTACTGGTTTCATGTATCCAAGTGCAGTTGACCATTTTAAGAAGCAATTTGCCTTCCTTGAAGAACACTATGGAAATGGTGCAACTGTTGCTCCTCCTGAAAGGCAGCATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAACACGGTGCAGAACTCGGCACAAGTTGCAAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTTGACTAGAGTTCCTATTCAAGTTCCTCAGTCTATTCAAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCAACGTGTTACGATACAACTGCGGAGCAACAGCAGCAGCAGCAGTGGCACCAGAAGTTCTGGAACAGCGGAGGATGATCAGAAACCCGTCCATTCCACCACCATACGCCGCTACTAACTGTTCGTATCCCAGACGAAACCCATCCTGTAAAAATGAAAGGACTGATGATGAAGCCATTGAAGGTTCAAATGGGTTGCAGCCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1683 43.43 MQSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHIGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNTVQNSAQVANDLSKCSIKEVERPQVDRTCNIPLTRVPIQVPQSIQGNGARPGKVVGNVLRYNCGATAAAAVAPEVLEQRRMIRNPSIPPPYAATNCSYPRRNPSCKNERTDDEAIEGSNGLQPKPQYIARKVAAAQGGPGNNWY 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1566217 1571462 + Carg05459-RA Car17g00253 164625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00253 560 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00253 560 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707|GO:0005524|GO:0006468
Car17g00253 560 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Car17g00253 560 MobiDBLite consensus disorder prediction 502 538 - -
Car17g00253 560 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g01053 Car17g00253 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00030 Car-Chr2:250886 Car17g00253 Car-Chr17:1566217 8.16E-127 dispersed
Car10g00306 Car-Chr10:1502928 Car17g00253 Car-Chr17:1566217 0 dispersed
Car11g00281 Car-Chr11:1535991 Car17g00253 Car-Chr17:1566217 0 dispersed
Car11g01641 Car-Chr11:12935511 Car17g00253 Car-Chr17:1566217 0 dispersed
Car17g00253 Car-Chr17:1566217 Car19g00847 Car-Chr19:8898907 0 dispersed
Car18g00057 Car-Chr18:284844 Car17g00253 Car-Chr17:1566217 3.83E-118 dispersed
Car17g00253 Car-Chr17:1566217 Car08g01053 Car-Chr8:7204705 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89467 PF00069 Pkinase 3.40E-67 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00253 - K04371 csv:101216364 1087.79