Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00259 ATGCCAACAAATTCCGGTCTGAAATTTCAGCGACGAGAGATTGAAAGTTCTTCGTACTCGATGCGTGGCCATGATTGGATCAATACGGTTCTTCCTGACGAACTAATCGTTGAGATCTTCCGGTGCCTTGACTCGAAGCTGAGTCGAGATGCTTGTTCTCTCGTCTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGAACCACTCTGCGAATTGGCGCAACGGGTAGCCCCGACCTTTTTGTTCAGCTCCTTGCTCGTCGTTTCGTCAATGTAAAAAATGTCCACATTGACGAGCGCTTGGCGATATCTCTCCCCCTTCATTCAGGAAGAAGACGGCGCAATGAGGTCATGCGCTTGCCATTTAAGTCACATCATGCAACTCATAATACTGGGACTGAAGGTGCAGCGGAGTCTTCTTGCCTGTCTGATGCTGGGCTAATTGCCCTCTCCGTAGGTTTTCCGAACCTTGAGAAACTGAGCTTAATTTGGTGCTCGAATATTTCAAGTCAGGGCTTGACATCCCTTGCTGAGAAGTGCAAATTTTTGAAGTCACTGGATCTACAGGGTTGCTATGTTGGGGATAGAGGTGTAGCTGCAGTTGGGGTATTCTGTAAACTACTCAAAGATGTAAATTTTCGTTTTTGTGAAGGGCTGACTGACGTTGGTTTGGTTGAATTATCCCGTGGCTGTGGGAAATCATTAAAATCATTTGGTATGGCTGCTTGTGCCAAGATAACGGATGTCGCACTAGAAGCTGTGGGCATGCACTGTAAATATCTGGAGTCCATATCGCTAGATTCAGAAGTTATCCATGACAAAGGGGTGCTTTCTCTTGCCCAAGGATGCACACTTCTTAAAGTTTTGAAGCTACAGTGTACAAATGTCACAGACGAAGCTTTGGTAGCTGTAGGCTCCTTGTGTCCTTTTCTGGAACTATTGGCTTTATACAGTTTTCAGGAATTTACAGACAAGGGACTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAGAATCTCACTCTAAGTGATTGTTATTACCTGAGTGATATAGGCTTGGAAGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAATGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGGAAAATCTTGCCTGTACTGTTTCTTTCGAACTCCTCCTGAAAATTTTTCTAGAATATTCAAATGGATCCAGCTAACTGAATTGGCTTTGCTGTATTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAATTGCAAGTTCTTACAAGCTCTCCATTTGGTAGATTGCTCGAAAATTGGAGACGAGGCAATATGCGGTATAGCCAAAGGATGCAGAAATTTGAAGAAACTTCATATTCGTCGATGCTATGAGATTGGGAATGCAGGAATTATAGCTGTTGGAGAGAATTGCAATCTCCTCATAGATTTGAGCCTCAGATTTTGTGATAGGGTTGGCGATGAGGCGCTTATTGCCATCGGCAAGGGATGTTCCCTTCATCAACTGAATGTTAGTGGGTGCCACCGCATTGGTGACGTCGGAATCGCAGCCATTGCTAGAGGTTGTCCCCAATTGTGTTTCTTGGACGTAAGCGTTCTTGAGAACTTGGGAGATATGGCAATGGCTGAGTTAGGAGAAGGCTGCCCCTTGCTTGAGGACGTGGTACTGTCTCACTGTCACCAGATAACTGATGCAGGTATAATGCATTTAGTGAAGGGGTGCTCGATGCTCGAATCGTGTCACATGGTCTATTGTCCCAGCATTACCGCAGCTGGGGTCGCCACTGTCGTTTCTAGCTGCCCCAACATAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACAAAACGACGTGCAGGCTCAGTTATTTCCTACCTTTGCGTGGACCTCTAG 1932 45.76 MPTNSGLKFQRREIESSSYSMRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVKNVHIDERLAISLPLHSGRRRRNEVMRLPFKSHHATHNTGTEGAAESSCLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCKFLKSLDLQGCYVGDRGVAAVGVFCKLLKDVNFRFCEGLTDVGLVELSRGCGKSLKSFGMAACAKITDVALEAVGMHCKYLESISLDSEVIHDKGVLSLAQGCTLLKVLKLQCTNVTDEALVAVGSLCPFLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYYLSDIGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIGKSCLYCFFRTPPENFSRIFKWIQLTELALLYCQKIVNSGLLGIGQNCKFLQALHLVDCSKIGDEAICGIAKGCRNLKKLHIRRCYEIGNAGIIAVGENCNLLIDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDVGIAAIARGCPQLCFLDVSVLENLGDMAMAELGEGCPLLEDVVLSHCHQITDAGIMHLVKGCSMLESCHMVYCPSITAAGVATVVSSCPNIKKILVEKWKVSERTKRRAGSVISYLCVDL 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1599925 1604996 + Carg05465-RA Car17g00259 164631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00259 643 Pfam Leucine Rich repeat 508 530 IPR001611 GO:0005515
Car17g00259 643 Pfam Leucine Rich repeat 179 200 IPR001611 GO:0005515
Car17g00259 643 Pfam Leucine Rich repeat 456 478 IPR001611 GO:0005515
Car17g00259 643 Pfam Leucine Rich repeat 559 581 IPR001611 GO:0005515
Car17g00259 643 Pfam F-box 31 68 IPR041567 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00259 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1082.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01059 Car17g00259 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01319 Car-Chr1:11798213 Car17g00259 Car-Chr17:1599925 4.44E-06 dispersed
Car01g01417 Car-Chr1:12262054 Car17g00259 Car-Chr17:1599925 1.90E-09 dispersed
Car04g00320 Car-Chr4:1779116 Car17g00259 Car-Chr17:1599925 8.90E-08 dispersed
Car04g00321 Car-Chr4:1783086 Car17g00259 Car-Chr17:1599925 6.29E-08 dispersed
Car04g01355 Car-Chr4:7852755 Car17g00259 Car-Chr17:1599925 2.29E-10 dispersed
Car04g02327 Car-Chr4:18756330 Car17g00259 Car-Chr17:1599925 5.17E-16 dispersed
Car08g00512 Car-Chr8:3234001 Car17g00259 Car-Chr17:1599925 4.89E-07 dispersed
Car09g00313 Car-Chr9:1731246 Car17g00259 Car-Chr17:1599925 1.97E-11 dispersed
Car09g00403 Car-Chr9:2238186 Car17g00259 Car-Chr17:1599925 3.27E-20 dispersed
Car10g00506 Car-Chr10:2547860 Car17g00259 Car-Chr17:1599925 9.60E-17 dispersed
Car11g01581 Car-Chr11:12550901 Car17g00259 Car-Chr17:1599925 1.64E-10 dispersed
Car12g01176 Car-Chr12:11301526 Car17g00259 Car-Chr17:1599925 2.39E-12 dispersed
Car15g00586 Car-Chr15:3234335 Car17g00259 Car-Chr17:1599925 3.08E-12 dispersed
Car17g00836 Car-Chr17:7116560 Car17g00259 Car-Chr17:1599925 5.44E-12 dispersed
Car19g00803 Car-Chr19:8674624 Car17g00259 Car-Chr17:1599925 1.00E-10 dispersed
Car20g00282 Car-Chr20:1620297 Car17g00259 Car-Chr17:1599925 5.55E-11 dispersed
Car20g00829 Car-Chr20:5509678 Car17g00259 Car-Chr17:1599925 1.42E-14 dispersed
Car08g01060 Car-Chr8:7243825 Car17g00259 Car-Chr17:1599925 1.03E-38 transposed
Car11g01354 Car-Chr11:11091084 Car17g00259 Car-Chr17:1599925 1.42E-14 transposed
Car17g00259 Car-Chr17:1599925 Car08g01059 Car-Chr8:7238506 1.24E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00259 Car_Chr17 FPKM 10.695438 10.59379 15.423384 15.307441 11.486973 11.022829 10.914524 39.696678 40.702328 40.115856