Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00262 ATGGGTTGTATACACACAAAATGTTGCTGTCGCTACCCAAAATCATTGGTTGGAGAATCCCAAGACTTTCATCAAGAAGATAAGAACACAGTGATCGAAAGATCATTGGAGTTCATTCCTGTTGCTTCGCACAACTATCACTTGGAATACTTGGTGCTGTCTCGGCGTGGGTTCTACCCTGAATCCCCTGATAAAGAAAATCAAGACAGTTTCTGCATTAGAACAAGCATTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAAGCTAATAGAAAAGCTTTGTAATGATCCCAAATTGTTGGATAATCCTGTACAAGCTTATAATTCAGCATTTTTGTGTACAAATAATGAGCTGCATACAAGTGAAATTGATGATTCAATGAGTGGAACAACTGCTATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCCAATGTGGGCGATTCAAGAGCTGTAATTGCAGTTAAGGAAGGGAACCGTGTCCTTGCCAAGGACTTGTCAAACGATCAAACACCATTTAGAAAGGATGAGTATGAGAGAGTTAGGCTTTGTGGGGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGGCTTATGGATCCTGATATTCAGTGCTGGGGCGACGAAGAGAGCCAGGGCGGCGACCCGCCTCGACTCTGGGTTCAAAATGGTTTGTATCCTGGGACTGCATTTACCAGGAGCATAGGAGATAGTACTGCAGAGAAGATTGGTGTAATTGCTGTTCCTGAGGTTTTAGTTCTTCAGCTTAAGGCTAATCATCTGTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCGAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGCACTGCCATTGCAGCCGAGTCCTATAAACTATGGATGGAACATGAAAATCGAACTGATGATATCACGATCATTATTGTTCATATAAAAGGCTTGTCTAATGTATGA 1038 41.52 MGCIHTKCCCRYPKSLVGESQDFHQEDKNTVIERSLEFIPVASHNYHLEYLVLSRRGFYPESPDKENQDSFCIRTSIQGNPNAHFFGVFDGHGQFGMQCSNFVKDKLIEKLCNDPKLLDNPVQAYNSAFLCTNNELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNRVLAKDLSNDQTPFRKDEYERVRLCGARVLSVDQVEGLMDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVIAVPEVLVLQLKANHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIKGLSNV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1625720 1627045 + Carg05468-RA Car17g00262 164634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00262 345 ProSiteProfiles PPM-type phosphatase domain profile. 49 339 IPR001932 -
Car17g00262 345 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169
Car17g00262 345 Pfam Protein phosphatase 2C 78 318 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01498 Car17g00262 CCT
Car08g01063 Car17g00262 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00074 Car-Chr1:417749 Car17g00262 Car-Chr17:1625720 1.09E-180 dispersed
Car10g00592 Car-Chr10:2991853 Car17g00262 Car-Chr17:1625720 5.16E-142 dispersed
Car11g00513 Car-Chr11:2776551 Car17g00262 Car-Chr17:1625720 2.60E-139 dispersed
Car17g00262 Car-Chr17:1625720 Car01g01358 Car-Chr1:12004334 2.07E-32 dispersed
Car14g01498 Car-Chr14:12409636 Car17g00262 Car-Chr17:1625720 0 wgd
Car17g00262 Car-Chr17:1625720 Car08g01063 Car-Chr8:7266066 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00262 - - csv:101217134 659.448