Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00277 ATGACTCCCTTCTGGAGTGATCGCGTGGACATTGATTGTACAGATACCGAAGTCTTTGACGGCCATCTTTCACCGCCTACATGTTCTGGTAACACAGGTGAGGAAGTCGATAAAGCTTCGTGTTCTTCAAGAACAGTTGACTTTTATGATGACATGTTTAAAACTGTAGTGAATCCTGTAAGTAATGAGTTTGAAACTCAATTAGTGGATCCCCTTGGAGAAACTCAAGTGTTCGATGTTGCGCGTGAAACCCAAATCTCGAGTCTCGGTGGTGAAACCCAGGAACTTGATGATCCCATTCCTGATTGTGTCAAGAATATGAACTTTGACACTCAAATATTGAATGATTCTGATGGTGAAGAGGCTGGTGATTGCTATGATAATGAAGGAACAGAGACAACTGAAATTAATGTTCATGACGATCTTTCCGGCGATGGATCAGCCCAAAGTTATGATCAAATGACCTCTCTCCGTGGACATGATGCATCGAAAGATTTAGAGGTACTACCGGACACGTTGCCTGATAAAAAATGTAATTCAGCCTCATTGTGTGCTTCTGGTTTAGCCGCCCGTAGTTCTGCCATGAAGACTAGAAGCCCCCGGTCTTCTTCTGTTATGATTGACAAGAGTATAGAAAAATCATCCTTAAAAGGTTATCACGTTGATTGGCAGAGTGATGTTGGGCAATTCTGTGAGATTGATGGAGATTCAAGTAACATTAAGTGCAGAGCTTCGATTCGTGTGGCCTCATTGCGTGCCTCTGGTTTAGCAGCCCGTTGTTCTGCCATGCAGACTAGAAACCCCACGCATTCGGTTATGATCGACAAGGATGTAGGAAAATCGTCCTTAAAAGATAATGATGTTGAGCGGCAGGCCGATCTTAAGTGCAGGGCTGGCAGTTCAGCAGCAAGAAAGCTTTTTGCTGATGATTATATACCTGTTGGAGATTTAGGAGATCTCGACACAAGCCATGATGTCAGTTATGTTGACCCGCTTCGTTTGACTGCATGTAATGGTGATCAGTTGGCAGGGTTAAGCTATGTCGACTCTCAAGAACCAGGGGATTTGACTCAAGACAATGCTCTTGATTTTGTTGAAAAGTTTCTTAAAGATAATTCTATGGAGTTTGATCAAGGAGGAGGTACTCGTAAATTGGATGCTATCGTGCAACCAAAATCTGTTCCTAACCCGAAAGGACAATATAATCTGGCTAACATTGTTAATTGTATGAGAACAGTTGGAGAATCGAGAGTTTTTGACTGGGACGATAATCGAGAAGATGAAGGAGGTGGAGATCTTTTCTGCAGAAGGAAGGAAGAGTTCTTCACCGAACCTCGAAATTTGAAAGGAAAACGAGTAGACTTGAATGGTGACTGGGAAGAATGTTTAAGTATAAAAAATATGAAGTCGAGGTTATTTTGTTCTGATTCACGTCTTGAGTTGAGTAAAGGAAACGAGAATGAGTCAGCTCGAGACGCCTTCGTCAAATGCAAAAAGAACCTATCCAATAAGTTGGATCAGCAGAATGATGGCGAAGCATGTTCGGGAGAGTTGGAAGACAATGGCGTCGATGATCAACAAGAAGTCTCTAATGTGGGTTTCGATACACAGATGACAGCTGAGGCAATGGAAGCATTATTCCATGATGAGAGTATCCATAAGTTAGTTCATAATGATAGTCCAAAGGACTCTTTCAGAGGTTCTCCTTTCAGAAAGCCAGACTCGAGCTCAAAATCAAGGCGATCTGCTAGGGGACATGCTTCTAGTTCTCGGGTTGCCCCTAGGCAGTCGAAAAAAAGAAACCAGAAGTTTTCTGGAACTCTCAGGAACGTGTGTGGAACCGATACTGTGAAATTGTCGGAATGGAGTAAGAAAAGAGACGCTGATGGAGTTGGCTGTGACTCTAGTAATGGATGTAACACGGTTCAGAAGCAGCTTTTACGTGGAAAAATCGTTGAGGTTTCACCTGTTGCACATCGAACAAGGAATTCGATGATGCTAAATCAATCGAAAAAGGCTAAGATTACATCTGGTGAACGTGAGCGGTCGGTTACAAAGGTAGGTTCATCAATCAAGAAAAGTTGTGGTGATAGCAATAGGGATTCTAAAGCAAAGAGAACAAAATCTTTAGAGGCTGCATCCGAGATTCTCGAAACGAAGTCGAAAGGCTCTGAAAATCGAGCTAAACGCTCCATAGGAGACCGAAAATCTTGTGATATGTTAGTTGGTCCGGTAAGTCTGTGTGAAGATTTACTTGGACGAACAATGAATAAGCGCAAGAGGTCGTGTAACATGAAGAAAACACGATCATCACCTCGTTTAAACGAGAACTTGGAAAGACCAATCAATGGTAGATTGTCCATCGAAGATTCTAACAGGCCAAATTCTGTTCAGCAGTTAAAGAAAAAAAACGATGGATGTTCGGTTTCTTCTATTGTAAACACTACGGTCGATACATTTCCGAGTAAAAGGCATAAACCATCCGACACAGTTTGTTCTACTCCGCCCGATAACTGTAGGACGCCTATAAAAGCTGCATCACCTGTTTGTATGGGCAGTGAATATTACAAACAATCATGCAAAAAGGGCCTCTCGAAACCAAGTCTTTTGAAAGAACTTCGTGATTTAACAGCTCCCGGTTTTGTATCGGGATCATTTCGTACTGAATCGAGGAAGAGAAAAGATATGAATGACGTTCGAGTCTTGTATAGCCAACACCTTGATGAGAACATAATCAAACAGCAAAAGAAGAGGTTGACTCACCTAGGGATTAACGTCGTATCGTCCATGACCGAGGCAACACATTTCATTGCCGATAAATTCGTACGTACGAGGAATATGTTAGAAGCCATTGCTCGAGGTAAGCTTGTGGTGACACACCTATGGATTGAGAGTTGTGGACAGGCAAGCTGCTTCATCGACGAAAAGAATTACCTCCTACGAGACGCCAAAAAGGAGAAGGAATTCGGCTTTAGCATGCCAGGTTCTTTGGCATGTGCTCGCCAGCGTCCTCTTCTCGAGGGTCGACGCGTGTTGATTACTCCAAATACAAAGCCTGGAAAAGACGTTATTTCGAGATTGGTCAAGGCAGTAAAGGGTCACGCAGTAGAAAGAATCGGGAGGTCTATGCTGAAGGATGATCAAATTTCAGATGATTTGTTGGTTTTGTCGTGCGAAGAAGATTACAATATGTGCATGTCTTTTCTTCAAAAAGGTGTCTCGGTGTATAGTTCTGAGTTGTTACTTAATGGGATCGTAACTCAGAGGCTTGAATTTGAAAGGCATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAATTCCATCCTGTTACCAAACGTCGATAA 3378 42.54 MTPFWSDRVDIDCTDTEVFDGHLSPPTCSGNTGEEVDKASCSSRTVDFYDDMFKTVVNPVSNEFETQLVDPLGETQVFDVARETQISSLGGETQELDDPIPDCVKNMNFDTQILNDSDGEEAGDCYDNEGTETTEINVHDDLSGDGSAQSYDQMTSLRGHDASKDLEVLPDTLPDKKCNSASLCASGLAARSSAMKTRSPRSSSVMIDKSIEKSSLKGYHVDWQSDVGQFCEIDGDSSNIKCRASIRVASLRASGLAARCSAMQTRNPTHSVMIDKDVGKSSLKDNDVERQADLKCRAGSSAARKLFADDYIPVGDLGDLDTSHDVSYVDPLRLTACNGDQLAGLSYVDSQEPGDLTQDNALDFVEKFLKDNSMEFDQGGGTRKLDAIVQPKSVPNPKGQYNLANIVNCMRTVGESRVFDWDDNREDEGGGDLFCRRKEEFFTEPRNLKGKRVDLNGDWEECLSIKNMKSRLFCSDSRLELSKGNENESARDAFVKCKKNLSNKLDQQNDGEACSGELEDNGVDDQQEVSNVGFDTQMTAEAMEALFHDESIHKLVHNDSPKDSFRGSPFRKPDSSSKSRRSARGHASSSRVAPRQSKKRNQKFSGTLRNVCGTDTVKLSEWSKKRDADGVGCDSSNGCNTVQKQLLRGKIVEVSPVAHRTRNSMMLNQSKKAKITSGERERSVTKVGSSIKKSCGDSNRDSKAKRTKSLEAASEILETKSKGSENRAKRSIGDRKSCDMLVGPVSLCEDLLGRTMNKRKRSCNMKKTRSSPRLNENLERPINGRLSIEDSNRPNSVQQLKKKNDGCSVSSIVNTTVDTFPSKRHKPSDTVCSTPPDNCRTPIKAASPVCMGSEYYKQSCKKGLSKPSLLKELRDLTAPGFVSGSFRTESRKRKDMNDVRVLYSQHLDENIIKQQKKRLTHLGINVVSSMTEATHFIADKFVRTRNMLEAIARGKLVVTHLWIESCGQASCFIDEKNYLLRDAKKEKEFGFSMPGSLACARQRPLLEGRRVLITPNTKPGKDVISRLVKAVKGHAVERIGRSMLKDDQISDDLLVLSCEEDYNMCMSFLQKGVSVYSSELLLNGIVTQRLEFERHRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1711451 1716690 - Carg05483-RA Car17g00277 164649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00277 1125 MobiDBLite consensus disorder prediction 696 710 - -
Car17g00277 1125 MobiDBLite consensus disorder prediction 788 805 - -
Car17g00277 1125 MobiDBLite consensus disorder prediction 670 710 - -
Car17g00277 1125 MobiDBLite consensus disorder prediction 589 607 - -
Car17g00277 1125 MobiDBLite consensus disorder prediction 506 526 - -
Car17g00277 1125 MobiDBLite consensus disorder prediction 557 607 - -
Car17g00277 1125 MobiDBLite consensus disorder prediction 557 581 - -
Car17g00277 1125 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 889 980 IPR001357 -
Car17g00277 1125 ProSiteProfiles BRCT domain profile. 891 980 IPR001357 -
Car17g00277 1125 MobiDBLite consensus disorder prediction 786 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00277 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - csv:101217520 1376.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01075 Car17g00277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01298 Car-Chr7:8083380 Car17g00277 Car-Chr17:1711451 1.33E-16 transposed
Car17g01070 Car-Chr17:8324545 Car17g00277 Car-Chr17:1711451 1.78E-11 transposed
Car17g00277 Car-Chr17:1711451 Car08g01075 Car-Chr8:7322121 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00277 Car_Chr17 FPKM 10.102145 10.602368 6.068845 5.916196 10.054031 9.025472 8.891462 1.35122 1.284528 1.43643