Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00278 ATGGAAAGCAAAGATTTCACGGGGGCTCGTAAGCTTGTTCTCAAGGCTCAACAGCTAAATCCGGACGCAGAGAATATTTCGCAAATGCTCATGGTTTGTGATGTGCATTGTGCGGCAGAGAAGAAGCTTTTAGGGAATGAGATGGATTGGTATGCCATTCTTCAGATCGAGCAAACAGCAAATGAGGCGACGATTAGGAAGCAATACCGGAAGTATGCTCTTCTACTTCATCCTGATAAAAACAAATTTATTGGGGCGGAAGCTGCTTTCAAGTTGGTTGGTGAAGCTCAACGAGTGCTGTTGGACCAAGAGAAACGCCGATTGCATGATATGAGACGCAGACCAGCTATACCGTATCAACCTCCACATAGAGCTGCTCCATCCTTTAATGTCGGGGTTCAAGCTAATTTCAGAAGCAACTTTACGAGCTTCATTCCTCAGCATCAGCCGCCTCAACAGCAAGGACACTCGGGGTTCAGTCATAATCGCGCGACTTTTTGGACTGTCTGTCCATTTTGTTCAGTGAGGTACCAGTACTATAAAGAAGTGGTTAATAGATCACTATGCTGTCAGAATTGCAAGAAGCCCTTTGTTGCATATGATATGGAACTACAAGGCGCTCACCCTCAACCCATGTCGAACTTGAACCAGACATCATTTTTCCAGCAGCAGAATTCCTTCAATCACAAGGCTGAGGCGGGACGCCCAGGAAACTCTCAGTCTGACAAGCGTCGGAGGACACGCAGCACTTCGGGTGCTGCTTCAGAAAAATTCACTGGTAAAAAGAAAAGGAAGCAGACTTCTGAATCTAGTGAGAGTTTTGATACGGGAACCAGCTCCGATCAAGAGGAAAATGTTGTTACTGATGAAGATAGCAGAAAGGATGTTGGTTGCTCGGGAGAGCAACGTCAGCGTAGATCGGTTCGAAGCAGGCAGAAGGTTTCTTACAATGAGAATGTAAGTGATGATGACAACGATGACTTTGTGATCACTCCAAAAAAATCAAAGAGAAGAAAATCATCAATCGTTTCTGACGACGACGTTGAAGAAGTATATGTAGATGGGGCATCTAAAATCAATAACCATTACAGATCTGTTGATTTGGATGCTGATCGGAAGGAAGTAAATAAGCAAGAAAATCATTGCTCTGAACGGAATTTATCGCATAGAAACAAGGGAAGTAAGAAGGCGAGTCATAAAGAAACAGCAGATAAGGATGTTTCTCAGGGAAGCACGGAGTCAGCTGGTGATCCCAAGTGTAATTTTCTTTCATGTTCTGATCCCGATTTCCATGATTTTGATAAACTGCGGAATCGAGAATGTTTTGCTCTCGGGCAGATCTGGGCTATGTATGATGATATTGATACTATGCCTAGATTCTATGCTTGGATCAAGAAAGTGTTTCCTTCTGGATTCAAGGTCCAAATCACTTGGCTCGAGCCAGAAGTAACCGATGATGGCCGAAGAAAATGTGTCGATAAAGAAATGCCAATTTCCTGTGGTGAGTTTGTTTTCGGAGCAACTGAAACCATGACAGATTGTGGTTCGATGTTTTCTCATGTTGTTTCCTGGGACAAAGGCTGTCGTAAAGACAGTTTCAAGATTTATCCAAGGAAAGGGGAAATTTGGGCTCTCTTCAAGAACTGGGATAAGAACAGTAACTGTGATTCCAATAGCCGATACGAGTATGAGTTTGTTGAGACATTATCGGAATTTACCGAAGAAGCTGGTATCGATGTTGCATTCTTAGCTAAGGTGAAAGGCTTTTCGTGTCTCTTTTGTCGAACGGTCAAGGAAGGTGGAAAACCAGTTAGAGTCCCTGCAGCTGAGTTGTTCAGATTTTCGCATCGGATTCCTTCGTTTCCACTCACGGGTGACGAACGAGAGGATGTTCCAGAAGATTCTTTGGAACTTGACCCAGCTGCTCTTCCCCCCAATGTTACTGAAATTGTGATCCCTGTGCAATTAAAAGAGATGGCCACTGCTGCTGATATTAAGACAGGTCTCCGGTCTGAGAGCGATGATGGTAATGTACCTGTAGCTTCGTCGGGCGAGGCTTATGAGATTCCAGATCCTGAATTTCACAACTTCGATGTCGACAAATCTTCTGAGAAGTTTGCCATTGGTCAGGTCTGGGCACTGTACAGTGACGAGGATGCCTTGCCGAGGTACTATGGTCTGATCAAGAAGATAACTCGTGAACCACGGTTCGAAGTGAAGTTGACGTGGCTCGTGTCCTCATCCCTGCCAAATGACACTATCGAATGGCACGATAAAGGCATGCTGATTCCTTGTGGGAGATTTAGAACTCAAAGGAGAACTACCATGCACTGCTGCACTTCCACCGATCCCTTTTCACATCTGGTTAGAACTGATTCTGCTCCTAATAGTGGCTTCTCCATCTTCCCAAGAACTGGTGAAGTTTGGGCATTATACAAGAACTGGACTCCTGAAATCAGATCTTCAGATTTAGAAAAATGTGAATACGATATAGCAGAAGTCATCGACGACGACGATTCACAAAAAGAAGTTATGGTCTTGAAACGCGTCGATGGCCATAACTCGATCTTCAAGGCTCAAACCAAAAACGATGGTTCCACACTCACTATGACAATTCCTCAAGCCGAGCTTCTACGATTCTCTCATCAGATACCTGCTTTTCGGTTGACAGACGAGCTGGGTGGTAGCTTGAGAGGTTGCTTGGAACTTGACCCTGCCGCTTTACCAGTATATTATTTTTCTTGA 2745 44.41 MESKDFTGARKLVLKAQQLNPDAENISQMLMVCDVHCAAEKKLLGNEMDWYAILQIEQTANEATIRKQYRKYALLLHPDKNKFIGAEAAFKLVGEAQRVLLDQEKRRLHDMRRRPAIPYQPPHRAAPSFNVGVQANFRSNFTSFIPQHQPPQQQGHSGFSHNRATFWTVCPFCSVRYQYYKEVVNRSLCCQNCKKPFVAYDMELQGAHPQPMSNLNQTSFFQQQNSFNHKAEAGRPGNSQSDKRRRTRSTSGAASEKFTGKKKRKQTSESSESFDTGTSSDQEENVVTDEDSRKDVGCSGEQRQRRSVRSRQKVSYNENVSDDDNDDFVITPKKSKRRKSSIVSDDDVEEVYVDGASKINNHYRSVDLDADRKEVNKQENHCSERNLSHRNKGSKKASHKETADKDVSQGSTESAGDPKCNFLSCSDPDFHDFDKLRNRECFALGQIWAMYDDIDTMPRFYAWIKKVFPSGFKVQITWLEPEVTDDGRRKCVDKEMPISCGEFVFGATETMTDCGSMFSHVVSWDKGCRKDSFKIYPRKGEIWALFKNWDKNSNCDSNSRYEYEFVETLSEFTEEAGIDVAFLAKVKGFSCLFCRTVKEGGKPVRVPAAELFRFSHRIPSFPLTGDEREDVPEDSLELDPAALPPNVTEIVIPVQLKEMATAADIKTGLRSESDDGNVPVASSGEAYEIPDPEFHNFDVDKSSEKFAIGQVWALYSDEDALPRYYGLIKKITREPRFEVKLTWLVSSSLPNDTIEWHDKGMLIPCGRFRTQRRTTMHCCTSTDPFSHLVRTDSAPNSGFSIFPRTGEVWALYKNWTPEIRSSDLEKCEYDIAEVIDDDDSQKEVMVLKRVDGHNSIFKAQTKNDGSTLTMTIPQAELLRFSHQIPAFRLTDELGGSLRGCLELDPAALPVYYFS 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1718032 1720776 - Carg05484-RA Car17g00278 164650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00278 914 MobiDBLite consensus disorder prediction 236 270 - -
Car17g00278 914 Pfam Domain of unknown function (DUF3444) 423 627 IPR024593 -
Car17g00278 914 Pfam Domain of unknown function (DUF3444) 686 892 IPR024593 -
Car17g00278 914 Pfam DnaJ domain 49 110 IPR001623 -
Car17g00278 914 MobiDBLite consensus disorder prediction 286 345 - -
Car17g00278 914 MobiDBLite consensus disorder prediction 369 417 - -
Car17g00278 914 MobiDBLite consensus disorder prediction 369 407 - -
Car17g00278 914 MobiDBLite consensus disorder prediction 229 345 - -
Car17g00278 914 ProSiteProfiles dnaJ domain profile. 49 113 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00278 - - - bhj:120092937 1514.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01076 Car17g00278 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00555 Car-Chr6:3151279 Car17g00278 Car-Chr17:1718032 7.53E-37 dispersed
Car10g00957 Car-Chr10:8331952 Car17g00278 Car-Chr17:1718032 2.10E-34 dispersed
Car11g00940 Car-Chr11:6062613 Car17g00278 Car-Chr17:1718032 4.86E-24 dispersed
Car17g00278 Car-Chr17:1718032 Car06g01430 Car-Chr6:10196326 6.39E-35 dispersed
Car17g00278 Car-Chr17:1718032 Car08g01076 Car-Chr8:7329132 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00278 Car_Chr17 FPKM 25.90921 26.207258 26.922253 28.216942 35.32975 34.198273 34.633236 21.222477 19.806547 19.654585