Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00281 ATGTTCTCCATCGCTGGATCTTCGGTTTCCATGCCGTCTATCTCCGCTTCTTTCAAGCACAGCCAGGTGTCTAACGGCAGGATCTCAGGTTTGAAATTAGTTTCGGCGCCTTTAGGCAAGGCCATTTTTCCCTTGCGAAGGAACTTCAGGCAGGGAAGCCTTCAGGTTTGCTGTGCGGCTAAACCAGAGACCATGGACAAGGTGGTTAAAATCGTGAAGAAACAGCTTGCTCTAGATGAGGATTCTGTGGTCAATGGAGAATCAAAATTTTCTGAGCTCGGAGCTGATTCTCTCGATACGGTTGAGATCGTGATGGGACTGGAAGAGGCATTTAAGATCAACGTGGAAGAAGAGAGCGCCCAAACCATCACCACCGTCCAAGAGGCCGCCGATATGATCGAGACTATTATTTCAAAGGACGGACCGAAGCCCGCAGCCTAA 441 49.43 MFSIAGSSVSMPSISASFKHSQVSNGRISGLKLVSAPLGKAIFPLRRNFRQGSLQVCCAAKPETMDKVVKIVKKQLALDEDSVVNGESKFSELGADSLDTVEIVMGLEEAFKINVEEESAQTITTVQEAADMIETIISKDGPKPAA 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1732083 1735819 - Carg05487-RA Car17g00281 164653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00281 146 PANTHER ACYL CARRIER PROTEIN 4 139 IPR044813 GO:0000036|GO:0006633
Car17g00281 146 Pfam Phosphopantetheine attachment site 66 133 IPR009081 -
Car17g00281 146 ProSitePatterns Phosphopantetheine attachment site. 92 107 IPR006162 -
Car17g00281 146 Gene3D - 60 140 IPR036736 -
Car17g00281 146 SUPERFAMILY ACP-like 62 141 IPR036736 -
Car17g00281 146 PANTHER ACYL CARRIER PROTEIN 2, CHLOROPLASTIC-RELATED 4 139 - -
Car17g00281 146 TIGRFAM acyl_carrier: acyl carrier protein 63 134 IPR003231 GO:0006633
Car17g00281 146 ProSiteProfiles Carrier protein (CP) domain profile. 62 137 IPR009081 -
Car17g00281 146 Hamap Acyl carrier protein [acpP]. 63 137 IPR003231 GO:0006633
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00281 - - - csv:101217997 228.024
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01078 Car17g00281 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00017 Car-Chr10:93542 Car17g00281 Car-Chr17:1732083 2.11E-37 dispersed
Car12g01105 Car-Chr12:10777211 Car17g00281 Car-Chr17:1732083 2.23E-37 dispersed
Car17g00281 Car-Chr17:1732083 Car08g01078 Car-Chr8:7341198 1.20E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g369 . . . . . Bpe14g01151 . . . Cmo17g00295 . . . . . . . . . . . . . . Cla06g00507 Cam06g0547 Cec06g0547 Cco06g0555 Clacu06g0533 Cmu06g0532 Cre06g1301 Cone14ag0788 Cone15ag0789 Cone7ag0182 Cone4ag0177 . . Chy11g01467 . Blo02g00577 Blo07g00190 Bda11g00543 . . Bpe13g00646 . Bma06g01520 . . . Cma08g01200 Cma17g00305 Car08g01078 Car17g00281 Cpe12g00257 Cpe17g00097 Bhi12g01745 . . . . . . . . . . . . . Lsi09g01393 . . Cme11g01973
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008190 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00281 Car_Chr17 FPKM 151.492981 156.460754 141.002365 145.528549 105.118309 92.183266 107.626862 151.231155 159.664978 168.250412