Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00288 ATGATTATTGGAACTAGGGTTTTGGGTTCACATTTAATGGTGGGCTCTGTGGAGCCGATGATTATTGGGGATTGCATTGACATGGAAGAAGGCGAAGCTTCTTGCTATCACAAGGAAAATGGCGGTGATATTGACCCTGATATTGCTCTCTCTTACATTGATGAGAAGATCGAGCGTTTTCTTGGTCATTTCCAAAAGGACTTCGAAGGTGGAGTTTCAGCCGAAAAGTTAGGTGCAAAGTATGGTGGTTATGGCTCATTTTTGCCTACGTACGAACGTGCTCCGTCCATTTTGCCACACAATATAAATCAACAAAGCGACTGCAATGCAGCAGCACCAACTCCAGTTAATGTGCCCTTGGAGAATCCAAAAGCTCCGCCGCCGAAGAGGTCGGAAGCTATTGTCTGCAATGCTATTTCCTCTCACAATAAAGGGACAGCTTCTGGGAGGGTAGATTCATGCTTACCTGCTACTAGAGTTACTAATAGCTACCCCTCGAAAGATGAAGCCACGGGCAGATTAGGCAGTCCAATGAGCAACAGATCGCTTAAATTTCGACTCAAAGTTGGTTCTGACAGCACTGCATTGAAAAATGCAGCAATATACAGTGGCCTTGGACTCGATGACTCTCCATTGTCGTCATCGGAAAACAGCTCCGACGTTAGTGAAGGGATGCTGCCCATTTCTCAAAGTTCACCAGACGAGTCCCCGACTAAGATAATTCAGGTGACGGCAATGACTTCTTTCCCAGTGCCTCATGGGGCATTGATATCACCTCTTCATGATAGCCTACTCGGGCTGTCGAGAAAGGAAAAACCGTTACGAGAAACCAAACCCGTGCTTTCCCTTGAGGATAAAAAAGATGGTTTGGCCAAGCTTGCCAGTGGGACGATTTTAAAGCAAAACGACAGTACATTGGTTAAGAAGAAGAAAAAGGAGACGGGGCATAAAGAACGGCAGGTCAATCCTAAGAATGAAGTTTATGCTTCTCGTTGCGAGGAGAAGACGACTCTAACTCTCGTAAATGGAAAATCAGAAAACGAGGCTTTTGTAAGCAAGGATTTACTCTCTAATGAGTTGCAATGCAAACCCGGTTCCGAGGTTACGAAGTCCAATGCGTACTTAGACCCACAAAAGAAGAAGCTTTCTCGTAAACCTACACTACACGAAACCGACAAAGACAAAGCATCGATTAAGAAAGAAAAGCCCGGAATTGTTGGCGAGAAGAATTTGAAAGTTATACAGACTGCTGGTGGGAAAATAGCTGGTTCATTTGAGGAAGGCTTCAAGAATAGAAGTGAAGCATTCAAAGGTAGAAAGGACACTGATTCTGACACTCCAGAATCTGAAAATAGAAAGCACAGGTTAAAACTACACAGCAATGAGAAAGTAGGAACAAACAATGGGGATTCTTTTAACCGCACGGGGTTAGATGAAAACCGTAAAAGTAAGGATGTAATTGAAAGGGCCTCCGGTGACTTACGGAGGCTCGATGGCCTATATGACAGTGGAATCAAATCGTCTAAATCCTTGAAGGTGATCGAACCAGCAGCAGGGGTGGCTCCTGTGGATGAATGGGTGTGCTGTGACATTTGTCAGAAATGGCGCCTTCTACCCTTCGGGACAAAACCCGATCAACTTCCTGATAAATGGTTATGTAGCATGCTCAATTGGCTGCCCGGGATGAACCGGTGTGACATTAGTGAGCAGGAGACGACGGAAAAGCTTTATGCTTTGTACCAGCTACCATTGCCTGAGAGTGGAAATGCTTTGCAGAGCCATGGCAATGGACTAATAGCAGGTGATACTTCAAATGAGGGAAAAAGGAAAGAAATACAAAATCCAGTTAGCAGAAATGGCCCGACTCTTCCAAAGAGTTCTTTGAAAGATCCGCTGCTGGAGTTGAGGAAAAAACGAAGTCTTTATGGCTCAAGTAACGTTCCAAATCAGTTGAAAAATTCAACGGATCGATCTTCTAGTGACCTGCACAACTCGATTGGATCTTCTCCTGATCCTTGTTCTTCGTCTACTGCTGCAGCTAATTGCAACGTATTGAAAAGGAAGAACAAGAGACCGGAAGGCGTGCGCTCTGTCGACAGTCATCAAGACTTCAATATGGAGCTCGGAAAATTGGGTTGTAGCTCGAATTCTGGCTTGACAAATATGGAAGGTGGGGAAGGTATGTTAAAGAAGCACAACAAATCGAACACAGAGAATAAAATGCAAATTTCATTGAAGAAACGTGGAGAAACAGCTGAGATCACAAAGAAAAGGAAAGTGAAGGATTGGCAGGATGATCAAAATTCTCATAACAGTGCACTACTCCATGAGCCTGTGCGTTCGAAGGAAGAAAGTTGTGAAAGGTCGAAGAAGAAAAAGAGGTTTGATCGTGTCGAACAAATCAGCCATGATAAGGATAACGAGCCGAAAATGCAAAATAAGAAGAATTTTGCTAAACAAACGTCAGTCGGTAAGGAGTTACTGAAGAGAAATTTAGTTGCTCGACAAGTATCGGCGGCAGGTAACTCTAGCTCTTCAAATGTTTCTCAATCTCATTTAACTAAAGCCAAATTTGGAGTGAAAGTATCTCCTGCTGAATCAGTTTCGTCGTCGCCGATGAGGACATCTGGCCTCGATCAATTTCAAGGAGAAAAAGAGGAGATTACCTCTGATATTCATACCGACTCTCGTAAAGTTACACCGGCGTTTGACGTTGGAGTTAAGGATACTGCTCTCGACACAAACAGCAAGAAAATCAAAGCTTCTTCTGTCGTTCAACGCCATGTCGTTACTGCTGATGTTAATGCTGTTAAGGATCCTAGGTTGAGCAAGCCCAGCAACAAGAAACGCAAGAAAGAGAACATACATATTGCTGGTGAAGGACTGGAAGCCCCTCAAAAACAGAAGGGTCACGACGCCGAAGACCAGAGATCGGGTGCTCTACTTCAATCAAATAAAGCAGTTAAACTTCAGACAAAGCTAAGTCGGGATTCCGAAGCGGGAAATAAAGGTGGTCCGAGAACAGTAGAAACAAGGGATGGAAAATCAAAATGCTCCTCTTCTGGAGGTGAATGCAAAGAACCGTCACGTCTTGGTGGCGATCCTTTACGAGTTTCTATTAGAGCAGGCGATTCTCATCAGCTTATTACCGATGCTTCTAAAAGTGGTGACGCAGTCGAGTTGAAGACGATAAAGAATGAACTTAACCACGGATATCAAAAACCCGATCTGCCAGGATCTAGAGATGTTAATGCTTCAAATCTCGACAGAACGAAATCCTCGAATCAGACTGCTTGTAATACATTGAAAGAAGCCAAAAAACTCAGAGACAGTGCAGATCACTTCAAGAGTTCTGGATTCACTTTTGAAAGCAATGAGCTTTACTTTCAATCTGCTCTGAAGTATCTTCATGGAGCATTCCTTCTAGAGACACTTAATAATACGAGTGGCAAGCCTGGTGATGTTTCTCCCATGCAGTTCTATGGCATTACAGCTGAATTGTGCGAGATCTGTGCTCTTGAATATGAACGTCGCCAAGAAATGGCTGCAGCTGCTTTGGCTTTTAAATGTATCGAAGTAGCTTATTTGAGGATCGTTTACCATAGACATTCAAGTGTCGATGGAGATCGCCTCGAGATGCACTCGTTGTTCCGTACAATTGTTCAAGGCGAATCTCCGTCTTCTTCGATATCCGATGTCGATAACTTAAGTAATCAAGGAGCTATGGATAAGGCGACTTTTGACAAGGGCAGTTCCCGAGGTGCGGGTAGTCACATCTGGAATGCTGCAAACAGCGCGAGTTTTGCTCGGGTCCTCGACTTTGCGCGGGATATGAATTCAGCTATGGAGGCATCGAGAAAATCTCGAAACGCGTTCGTGGCAGCTACTACTACGAGTTCATGTGGGAGCGAAGGAAAACATGTGGACTATGTTATTGAATCAATTAAAAAGGTGATTGATTTCAGCTTCCAAGAAGTGGAGGAGCTCGTGCAGTTGGTTCGAGTCGCTACACAGATAATAACCCGCTCGGTTTATGTCCTTGTTGATTAA 4050 44.07 MIIGTRVLGSHLMVGSVEPMIIGDCIDMEEGEASCYHKENGGDIDPDIALSYIDEKIERFLGHFQKDFEGGVSAEKLGAKYGGYGSFLPTYERAPSILPHNINQQSDCNAAAPTPVNVPLENPKAPPPKRSEAIVCNAISSHNKGTASGRVDSCLPATRVTNSYPSKDEATGRLGSPMSNRSLKFRLKVGSDSTALKNAAIYSGLGLDDSPLSSSENSSDVSEGMLPISQSSPDESPTKIIQVTAMTSFPVPHGALISPLHDSLLGLSRKEKPLRETKPVLSLEDKKDGLAKLASGTILKQNDSTLVKKKKKETGHKERQVNPKNEVYASRCEEKTTLTLVNGKSENEAFVSKDLLSNELQCKPGSEVTKSNAYLDPQKKKLSRKPTLHETDKDKASIKKEKPGIVGEKNLKVIQTAGGKIAGSFEEGFKNRSEAFKGRKDTDSDTPESENRKHRLKLHSNEKVGTNNGDSFNRTGLDENRKSKDVIERASGDLRRLDGLYDSGIKSSKSLKVIEPAAGVAPVDEWVCCDICQKWRLLPFGTKPDQLPDKWLCSMLNWLPGMNRCDISEQETTEKLYALYQLPLPESGNALQSHGNGLIAGDTSNEGKRKEIQNPVSRNGPTLPKSSLKDPLLELRKKRSLYGSSNVPNQLKNSTDRSSSDLHNSIGSSPDPCSSSTAAANCNVLKRKNKRPEGVRSVDSHQDFNMELGKLGCSSNSGLTNMEGGEGMLKKHNKSNTENKMQISLKKRGETAEITKKRKVKDWQDDQNSHNSALLHEPVRSKEESCERSKKKKRFDRVEQISHDKDNEPKMQNKKNFAKQTSVGKELLKRNLVARQVSAAGNSSSSNVSQSHLTKAKFGVKVSPAESVSSSPMRTSGLDQFQGEKEEITSDIHTDSRKVTPAFDVGVKDTALDTNSKKIKASSVVQRHVVTADVNAVKDPRLSKPSNKKRKKENIHIAGEGLEAPQKQKGHDAEDQRSGALLQSNKAVKLQTKLSRDSEAGNKGGPRTVETRDGKSKCSSSGGECKEPSRLGGDPLRVSIRAGDSHQLITDASKSGDAVELKTIKNELNHGYQKPDLPGSRDVNASNLDRTKSSNQTACNTLKEAKKLRDSADHFKSSGFTFESNELYFQSALKYLHGAFLLETLNNTSGKPGDVSPMQFYGITAELCEICALEYERRQEMAAAALAFKCIEVAYLRIVYHRHSSVDGDRLEMHSLFRTIVQGESPSSSISDVDNLSNQGAMDKATFDKGSSRGAGSHIWNAANSASFARVLDFARDMNSAMEASRKSRNAFVAATTTSSCGSEGKHVDYVIESIKKVIDFSFQEVEELVQLVRVATQIITRSVYVLVD 1349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1785417 1792954 + Carg05494-RA Car17g00288 164660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00288 1349 MobiDBLite consensus disorder prediction 642 677 - -
Car17g00288 1349 Pfam CW-type Zinc Finger 525 571 IPR011124 GO:0008270
Car17g00288 1349 ProSiteProfiles Zinc finger CW-type profile. 520 573 IPR011124 GO:0008270
Car17g00288 1349 MobiDBLite consensus disorder prediction 1006 1020 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 432 477 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 377 403 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 207 236 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 757 811 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 1070 1096 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 366 403 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 591 677 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 978 998 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 936 1036 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 432 461 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 776 811 - -
Car17g00288 1349 MobiDBLite consensus disorder prediction 208 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00288 - - - bhj:120067193 1857.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01090 Car17g00288 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00356 Car-Chr8:2302307 Car17g00288 Car-Chr17:1785417 1.33E-15 dispersed
Car17g00288 Car-Chr17:1785417 Car17g01054 Car-Chr17:8240185 8.51E-26 dispersed
Car08g01089 Car-Chr8:7422108 Car17g00288 Car-Chr17:1785417 1.70E-51 transposed
Car08g01090 Car-Chr8:7430158 Car17g00288 Car-Chr17:1785417 0 transposed
Car17g00288 Car-Chr17:1785417 Car08g01088 Car-Chr8:7419976 1.23E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00288 Car_Chr17 FPKM 347.49408 415.644989 502.159912 510.336304 248.105545 221.704254 232.163864 559.513977 584.213867 590.000549