Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00298 ATGGGCCTCAGGCCCATCATAGGAAGCAAGCACATGCAACCCTTGCGCCATTACTTACCAGAAATTCAAACCTCGTTTCACAAGCTTCCTTCCCCGCTGGTTATGGCGGGTACGTGCGGCTCCGCTGTCTCTTTCTCTATTCATTGCAACAAATTCGCCATTTGCAGCACCAAGCCATTGCTTTCAGTTTCAGCTTCCATTTCCATTTCATCTCGTTCGAGGCTCACAAGAAGAAAAAATCACTTGCGAATCAAAATCCTCAAAACCCTAACTAAACCTCTTCCGTTCACTGTCTCTCCCATTCCTCCGCAAATCGACTCTGAAACTCCGATCGTATCGCCGGAAATCTCAGGTCCTGCAGGCGTCGAGACCGAGGTGTTATCTCCGGTGGAATGTTGCCCTTCCTCCACTACCACGGACGGTGAATCTCGACTCTCCGAGAGCTCGGACACTGCCTCGTTGTATAACTTTGATGTTGCCAACTTTTCTTTCGGAAGTTTTGTCAGGTTTGGCGTTTACTTGCTTGCTCTTTTTGCGTTTCAGACAATCTGTACTGTGTGGGTTTTAGATTATGGTAATTCAATTAAGGAAGATAAGAACTCAGATAAAGATTTGAGTATTAGAAGCAAAAGCGTAAAAGAAGTGTTGTTGAATGGAAATGAGAGAATCGTTCTTGGAAATTTCGGGTCTAAAACGAACGAGTTGGTTTATTTGGACGAATCGAAGATGAGAGACAAAATTGAAGAGATCAGGTTGTTGGCTAGGAAAGCAAGGAAAGAGGAGAAATATCAAAAACCTGATGATTTAGGGGAGGGCGACACGGAGGGTAGAAATGTAATTTCAAGGGCTAGGATTGGTATTGATAAAGAGATTGATGCTCGACTTGTTAAGTTACAGAAGAGGCTAAATTCTAACAAAGATAGGATACCGGATTCACCTGTAAATTTTTTGTTCAAGTCTGAGAATGTTGAGGAAGCTGCCAAAAGGAATGATTTCAAGGATGAAGAAGAACGGAATAAGAGTCTAATATATAAGAAAAAGTTGCAATTCAGAAACTCTAATGGTGATAGAATGAAGAAGCCTAAGGGGTTTCAAGGATTTGATTCTAATGGTAAGAAAAGTGGCTCAAATGGCAAGGCTACAACAAGGAAAGGTGCAAATTTTGCTGGTGATAACAAGGGAGTGAAGGATGCCAAAAAGCGAGTAGCTAACGAAATCAAGTATAGCGATCCCAAGATGTTCGAAGATGATAGCACGAATTTGGGCAGTGAAAAATCTGTATTGCTACAGAAAAACGATGGAACGAATTTGGATCTTGATATTAAGGTTTCGAGTTCAAAGAAGAAATCAAGTAATGGTGCCGTTCAGGGGACTTCTTCAGTAGAGATCTCGAAGTCACAGAATTTAAAAGATGTTATTTTTATGCATCGAGGTTCCGAAGATGAAGAACATGGAGGACTTTTCACCTTAAGGGTTCCTTCCAAGACACAGGATAGTGAGGAATATACTACATATACAGTTGCTTTTGAACACCATGTTGATGCAAATAACTTCTGTTATCTTCTGGAATCATTCTTTGAAGAGCTCGACAATTTCACAACCGACGTCGTTCCTCTGCCAACAAAAGAACTCGAGAAGGTCATAAAATCACATACAAGTAAAATGATTGTTGTGAAGAAGGGGCAATTGCAGCTCTATGCTGGTCAACCGTTTGCCGATGTCGAGATGGCTTTGTATGCATTAGTCGAGCGAAATGAGAATGTTATTTCTTTACATTCGAGATAG 1785 41.4 MGLRPIIGSKHMQPLRHYLPEIQTSFHKLPSPLVMAGTCGSAVSFSIHCNKFAICSTKPLLSVSASISISSRSRLTRRKNHLRIKILKTLTKPLPFTVSPIPPQIDSETPIVSPEISGPAGVETEVLSPVECCPSSTTTDGESRLSESSDTASLYNFDVANFSFGSFVRFGVYLLALFAFQTICTVWVLDYGNSIKEDKNSDKDLSIRSKSVKEVLLNGNERIVLGNFGSKTNELVYLDESKMRDKIEEIRLLARKARKEEKYQKPDDLGEGDTEGRNVISRARIGIDKEIDARLVKLQKRLNSNKDRIPDSPVNFLFKSENVEEAAKRNDFKDEEERNKSLIYKKKLQFRNSNGDRMKKPKGFQGFDSNGKKSGSNGKATTRKGANFAGDNKGVKDAKKRVANEIKYSDPKMFEDDSTNLGSEKSVLLQKNDGTNLDLDIKVSSSKKKSSNGAVQGTSSVEISKSQNLKDVIFMHRGSEDEEHGGLFTLRVPSKTQDSEEYTTYTVAFEHHVDANNFCYLLESFFEELDNFTTDVVPLPTKELEKVIKSHTSKMIVVKKGQLQLYAGQPFADVEMALYALVERNENVISLHSR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1856922 1861044 + Carg05504-RA Car17g00298 164670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00298 594 MobiDBLite consensus disorder prediction 348 397 - -
Car17g00298 594 Pfam Protein of unknown function (DUF3110) 482 563 IPR021503 -
Car17g00298 594 MobiDBLite consensus disorder prediction 369 383 - -
Car17g00298 594 MobiDBLite consensus disorder prediction 348 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00298 - - - bhj:120068224 794.653
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g304 . Blo12g00018 . . Bpe04g01134 . . . . Cmo17g00313 . . . . . . . . . . . . . . Cla06g00479 Cam06g0514 Cec06g0515 Cco06g0518 Clacu06g0498 Cmu06g0500 Cre06g1271 . . . . . . Chy11g01508 . . . . . . . . . Sed04g1796 . . . . . Car17g00298 Cpe12g00276 . Bhi12g02060 Tan06g2675 Cmetu11g2440 Lac11g0838 Hepe03g0103 . Lcy12g0730 . . . . . . . Lsi09g01429 . . Cme11g02010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010430 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 4 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00298 Car_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.567052 0.434839 0.0 0.0 0.0