Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00301 ATGGGCGGCCAGATGCAGCAGAGCAATGCTGCGGCGGCGACCGCCTTTTACGACCACGCCGGCGGTGGGACCCTGCACAATGCAGGCCCCACTAACGACGCCGGTGACGCGGTCATGGCTCGGTGGCTCCAGTCTGCTGGCTTGCAGCATCTGGCCTCTCCATTGGCTGATCAACGCTCCCTCCTCATGCAGAGTTATGGAGCACAATCTGCTGAAGAGAAACAGAGGCTCCTAAAACTGATGAGAAACCTGAACTTTGGTGGGGAGTCTGGATCTGAACCACATACACCTACTGCCCAAGCTTCAGGAGTACTTGGTGTGATGGATGGGTATTATTCTCCCGAATTTAGGGGAGATTTTGGTGCTGGACTTTTGGATCTTCATGCTATGGACGATACCGAGCTTTTGTCTGAGCATGTTATGTCAGAACCATTTGAGCCGTCACCATTTATTCCTAGTGGTACTAGACCATTTGAGGATGAATTTAATATAGCTAGCAGCAGGCAGCCAAGAAGCCAAGCTGATGAAGATGCTGTGGCTACATTACCTGTTATTGAAAAAGAGAATGTTGCCAGAGAAAATAATGTGGCTAAAATCAAAGTTGTGGTGAGAAAGAGACCATTAAACAAGAAAGAGCATGCTCGTAAGGAGGATGATATTGTCTCAGTATGCGACAATGCCTCTTTGACTGTTCATGAACCAAAACTAAAGGTGGACTTGACTGCATATGTGGAGAAGCATGAATTCTGCTTTGATGCAGTTCTTGATGAGCAGGTTACCAATGATGAGGTTTATAGGGTTACTGTACAACCAATTATTCCCATCATCTTTGAACGGACAAAGGCTACATGTTTTGCTTATGGTCAGACAGGCAGTGGCAAGACGTTTACAATGCAGCCATTACCTCTTAGAGCTGCTGAAGACCTCGTTAGATTGTTACATCAGCCAGTTTATCGCAATCAGAGATTCAAGTTGTGGCTTAGCTTTTTTGAGATATATGGTGGAAAACTATTTGATCTACTCAGTGACAGAAGGAAGCTTTGCATGAGAGAAGATGGGAGGCAGCAGGTTTGTATAGTTGGACTTCAAGAATTTGAAGTATCTGATGTTCAAATTGTCAAAGAATATATCGAAAAGGGAAATGCAGCTAGGAGTACAGGTTCCACTGGTGCCAATGAGGAGTCTTCAAGGTCACATGCTATATTGCAACTTGCTATTAAGAAACACCCTGAAGTCAAGGAATCGAGAAGGAACAATGATGGAAATGAGTTGAAAAGTGGGAAGCTTGTTGGGAAGATCTCTTTTATTGATTTGGCTGGTAGCGAAAGAGGTGCTGATACAACTGATAATGACCGTCAGACAAGGATTGAGGGAGCAGAAATTAACAAAAGTCTTTTGGCTTTGAAGGAATGCATCCGTGCCTTGGACAATGATCAGATTCATATACCCTTCCGTGGAAGCAAACTTACAGAAGTGCTTCGTGATTCGTTTGTTGGCAACTCGAGAACTGTTATGATATCATGCATTTCTCCGAATGCTGGCTCATGTGAGCATACTCTCAACACTTTGAGATATGCCGACCGGGTCAAAAGTTTGTCCAAAAGTGGAAATGCAAAAAAGGATCCGGCTGTCAGTTCCAGTCAACCAATAACTAAAGATGCTTCTTCAGCCCCGACTATTCCAATTCCAACTGAAGCAGAAGATATTAATATGCTGCGCCAAGAGGTGAAATTAGGGGAATTGGGCAGAAGGGTCGCAGAGAAAGAGAGTCTCTCCTCTTCCAACTTTGACATGCCAACTACTACTTTGCCATCAAGTAATACCTTCCATGCTCGAGATGAAAAAAGTGCAAGTGTAACTGTAACTTCTGCGTCATTTGACAAGGAGCCATCTGAAATGAGGAACACTCACAGTGATCCGACGGGTCGAAAGATTCCCATGTATTCCCCCAACTTAAATGATACAGAGAAGGTGAAAAAGGTATCGCCACCCCGAAGAAAATCATCCCGAGAAGAAAAATCAGAAAAGTTAGGGAGCTGGCAGAAGAAAGATAGTGGTGTGCCTGATCCCTCAACTGCAAGCTCCAAGCAGTATGGTCCAGGAATTTCTAACACAAATGATGCTGGATCCAAAAAGTCTGAACCTGAGCCTACTCCTGATGGGAATATTAATGCAATACTGGAGGAAGAGGAGGCGTTAATTGCTGCACATCGAAAAGAAATTGAGGACACCATGGAGATAGTGCGTGAAGAAATGAAACTGTTGGCAGAAGTGGATCAACCTGGGAGCCACATTGAAAGCTACGTGACTCAGTTGAGTTTTGTGCTGTCTCGAAAGGCGGCTGGGTTGGTGAGTCTTCAAGCACGCCTTGCAAGGTTCCAGCATAGACTTAAAGAACAAGAAATACTCACCCGAAAAAGAGTATTGCGTTAG 2433 44.72 MGGQMQQSNAAAATAFYDHAGGGTLHNAGPTNDAGDAVMARWLQSAGLQHLASPLADQRSLLMQSYGAQSAEEKQRLLKLMRNLNFGGESGSEPHTPTAQASGVLGVMDGYYSPEFRGDFGAGLLDLHAMDDTELLSEHVMSEPFEPSPFIPSGTRPFEDEFNIASSRQPRSQADEDAVATLPVIEKENVARENNVAKIKVVVRKRPLNKKEHARKEDDIVSVCDNASLTVHEPKLKVDLTAYVEKHEFCFDAVLDEQVTNDEVYRVTVQPIIPIIFERTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSFFEIYGGKLFDLLSDRRKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHPEVKESRRNNDGNELKSGKLVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNAKKDPAVSSSQPITKDASSAPTIPIPTEAEDINMLRQEVKLGELGRRVAEKESLSSSNFDMPTTTLPSSNTFHARDEKSASVTVTSASFDKEPSEMRNTHSDPTGRKIPMYSPNLNDTEKVKKVSPPRRKSSREEKSEKLGSWQKKDSGVPDPSTASSKQYGPGISNTNDAGSKKSEPEPTPDGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSHIESYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILTRKRVLR 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1867341 1873962 - Carg05507-RA Car17g00301 164673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00301 810 MobiDBLite consensus disorder prediction 685 712 - -
Car17g00301 810 Coils Coil 783 803 - -
Car17g00301 810 Coils Coil 727 758 - -
Car17g00301 810 MobiDBLite consensus disorder prediction 533 562 - -
Car17g00301 810 MobiDBLite consensus disorder prediction 588 629 - -
Car17g00301 810 MobiDBLite consensus disorder prediction 658 682 - -
Car17g00301 810 MobiDBLite consensus disorder prediction 538 558 - -
Car17g00301 810 MobiDBLite consensus disorder prediction 588 722 - -
Car17g00301 810 ProSitePatterns Kinesin motor domain signature. 431 442 IPR019821 GO:0003777|GO:0005524|GO:0007018
Car17g00301 810 ProSiteProfiles Kinesin motor domain profile. 198 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car17g00301 810 Pfam Kinesin motor domain 204 531 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00301 K10393 KIF2_24, MCAK; kinesin family member 2/24 - csv:101210544 1450.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01104 Car17g00301 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00566 Car-Chr10:2860241 Car17g00301 Car-Chr17:1867341 7.61E-23 dispersed
Car11g00484 Car-Chr11:2633414 Car17g00301 Car-Chr17:1867341 1.07E-08 dispersed
Car17g00301 Car-Chr17:1867341 Car17g00745 Car-Chr17:6659984 2.62E-20 dispersed
Car17g00301 Car-Chr17:1867341 Car08g01104 Car-Chr8:7495550 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g296 . . . Bda08g00291 . . . . Cmo08g01203 Cmo17g00316 . . . . . . . . . . . . . . Cla06g00478 Cam06g0512 Cec06g0513 Cco06g0516 Clacu06g0496 Cmu06g0498 Cre06g1269 Cone14ag0761 Cone15ag0770 . . . . Chy11g01510 . . . . . Bpe05g00836 . . . Sed02g1073 . . Cma08g01228 Cma17g00327 Car08g01104 Car17g00301 Cpe12g00278 Cpe17g00027 Bhi12g02054 Tan06g2680 Cmetu07g0697 . . . . . . . . . . . Lsi09g01431 . . Cme11g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007921 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00301 Car_Chr17 FPKM 1.297167 1.184248 2.705713 2.423535 10.353105 10.267979 9.593016 3.008003 1.86108 2.512608