Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00306 ATGCCAGGCCCCGCCTTAGAGATGGAGCCAGTAGAACCACAGTCATTGAAGAAGCTTAGCTTCAAATCTCTCAAAAGAGCTCTAGACCTTTTCTCTCCGGTCCACGGCCATGTCGCTCCTCCCGATCCCGAGAGCAAAAAAATTCGCATCAGTCATAAGATAAGTGTTGAGTACGGAGGATTAAAGAACACCGGAGCTAAGTCTACTGGCCAAGCAAGTTCCGCCCCCGATAGCGCCATTGGAACGTCAGCGCCTTCCAATGCCCTCGTGCTTACTGGTCCGGGTAGTTCTGGAGATGCAAAGTCTGTAGCACAAAATGCACTGGTCATTGGTCCAACTGTACAACCGAATGCACAAAACGATGGTGGCCTCCAGGGAAGAAGCTCAGCTATTATTTCTGCATCTGGTTCATCTGAAAGGATGTCAACATCTGCAATTATGGAAAGAATTCCAAGCAAGTGGCCACGTCCAGTTTGGCATGCTCCATGGAGAAATTATAGGGTCATAAGTGGTCACTTAGGGTGGGTAAGGTCTGTTGCATTTGATCCCAGTAACACGTGGTTTTGTACTGGATCTGCCGATCGCACAATCAAGATTTGGGATGTTGCGAGTGGGAAGCTAAAACTCACATTGACAGGCCATATTGAGCAAGTACGAGGTCTTGCTGTCAGCAACAGGCATACCTACATGTTTTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTGGAACAGAATAAGGTAATTCGCCATTACCATGGTCATCTGAGTGGTGTTTACTGTTTGGCTCTTCATCCAACAATCGATGTTTTGCTCACTGGGGGACGTGATTCCGTCTGCCGGGTGTGGGACATCCGAAGTAAGATGCAAATTCATGCCCTCTCTGGACATGATAACACCGTTTGCTCAGTTTTTACTCGACCTACGATAGATCATTTTCTTCTGTTCCTGCATAATATTAGTTTCTCCTCTTCTCGCTTGATGCCTCCTTTATTCTGCATGATCAGGCCTAGATGTTCTATTCGTTATGGTTCTGGGATGGATCCACAAGTTGTGACTGGCTCCCATGACACAACTATTAAGTTTTGGGACCTCAGATATGGAAAGACAATGACAACTCTGACATACCATAAGAAATCTGTTCGGGCAATGGCATTGCATCCTAAAGAGAACAGTTTTGCATCTGCTTCAGCTGACAACATCAAGAAATTTAACCTTCCCAGAGGGGAGTTTATGCACAATATGCTTTCTCAGCAGAAGACTATAATCAATGCAATGGCTGTCAATGAGGAGGGTGTTATGGCGACTGGAGGTGATAATGGTAGCTTATGGTTCTGGGATTGGAAGAGTGGTCATAACTTTCAGCAATCGCAAACAATTGTACAGCCTGGCTCGCTGGACAGTGAAGCCGGTATCTATGCTCTCTCGTACGACATAACTGGTTCGAGGCTTCTAACCTGTGAAGCAGACAAAACGATCAAAATGTGGAAGGAGGATGAAAACGCTACCCCAGAAACTCATCCCCTCAACTTTAAGCCACCGAAAGATATCCGACGATTCTAG 1566 46.17 MPGPALEMEPVEPQSLKKLSFKSLKRALDLFSPVHGHVAPPDPESKKIRISHKISVEYGGLKNTGAKSTGQASSAPDSAIGTSAPSNALVLTGPGSSGDAKSVAQNALVIGPTVQPNAQNDGGLQGRSSAIISASGSSERMSTSAIMERIPSKWPRPVWHAPWRNYRVISGHLGWVRSVAFDPSNTWFCTGSADRTIKIWDVASGKLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRHYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTIDHFLLFLHNISFSSSRLMPPLFCMIRPRCSIRYGSGMDPQVVTGSHDTTIKFWDLRYGKTMTTLTYHKKSVRAMALHPKENSFASASADNIKKFNLPRGEFMHNMLSQQKTIINAMAVNEEGVMATGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLLTCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1900998 1910007 - Carg05512-RA Car17g00306 164678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00306 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 248 - -
Car17g00306 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 288 - -
Car17g00306 521 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Car17g00306 521 Pfam WD domain, G-beta repeat 164 201 IPR001680 GO:0005515
Car17g00306 521 Pfam WD domain, G-beta repeat 206 243 IPR001680 GO:0005515
Car17g00306 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 210 IPR001680 GO:0005515
Car17g00306 521 MobiDBLite consensus disorder prediction 61 80 - -
Car17g00306 521 MobiDBLite consensus disorder prediction 500 521 - -
Car17g00306 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Car17g00306 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 169 206 - -
Car17g00306 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 374 IPR001680 GO:0005515
Car17g00306 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 252 IPR001680 GO:0005515
Car17g00306 521 MobiDBLite consensus disorder prediction 62 80 - -
Car17g00306 521 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00306 K12862 PLRG1, PRL1, PRP46; pleiotropic regulator 1 - csv:101221493 911.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00306 Car-Chr17:1900998 Car08g00308 Car-Chr8:1972092 1.97E-24 dispersed
Car17g00306 Car-Chr17:1900998 Car05g00825 Car-Chr5:8153546 3.70E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008619 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00306 Car_Chr17 FPKM 0.319036 0.862257 1.595494 1.826197 1.810173 1.990919 1.775297 3.963329 2.73079 2.472875