Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00316 ATGGTCAGAAACATGTCGATAAAGAAAAAGAGTAACGAAGACGGCGAGAAAGAAGCGGCTCGAGAAATGGCGAAAGAGGCGAAAAGGAACAAATCCATGATTTGTTTATCCGGAAGTGTTAAAACCAGCAAGTTCGATGATATGGCTTATGTTTGCACCAAAAGAGGAAATAAAGGAATCAATCAGGATTCCCTTGTTGTCTGGGAGGACTATGGTTGCCAAGGAGACGTAGTTTTCTGTGGGATCTTTGATGGACATGGTCCTTGGGGCCACATGATTAGCAAACAGGTCAGAAAGTCTCTGCCTCTTGAATTGCTGACCAATTGGCAGCAAAACCTTTCCATGGAAGCCGACCAAAACCTTTTTCCTTTCAACATATGGAAGCAATCTTGCTTAAAATCATATGCCGCCATTGATGAGGAGCTCAAGCAACACCCTCGCATTGATTCCTTTTACAGTGGCACAACCGCTTTAACTGTGGTTAAACAGGGCCGAAATCTTGTGGTTGCAAATGCTGGCGATTCAAGAGCTGTGTTGGCGGTAACTTCTGATGACGGCTGCTTGAAACCAGTTCAACTCTCCGTTGATTTCAAACCTAATTTGCCTGAGGAAGCTGAGAGAATAAAACAATCGAGAGGGCGAGTGGTATGCTTAAAGGACGAACCGGGGGTCTACAGAGTGTGGACCCCCAACTCGGGCACGCCAGGTTTGGCCATTTCCAGAGCTTTCGGCGATTACTGCACCAAACAGTACGGCCTCATTTCTGTGCCTGATGTTAGCCACCGAACCATTACCTCTGGAGACCAGTTCGTCATTGTGGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCGGTTCATATAGTTTCTTCAACGTCAAATAGGGAAATGTCGGCCAAAAGACTAGTGGACTGTGCTGCTCGTGCATGGAAATCAAAGAAACGAGGCATTGCAAGAGACGACATGTCGGCTATTTGCCTCTTTTTTAATGCTTCCCCCACAGAATATGATCGAGACGTAAATATATAG 1035 46.18 MVRNMSIKKKSNEDGEKEAAREMAKEAKRNKSMICLSGSVKTSKFDDMAYVCTKRGNKGINQDSLVVWEDYGCQGDVVFCGIFDGHGPWGHMISKQVRKSLPLELLTNWQQNLSMEADQNLFPFNIWKQSCLKSYAAIDEELKQHPRIDSFYSGTTALTVVKQGRNLVVANAGDSRAVLAVTSDDGCLKPVQLSVDFKPNLPEEAERIKQSRGRVVCLKDEPGVYRVWTPNSGTPGLAISRAFGDYCTKQYGLISVPDVSHRTITSGDQFVIVATDGVWDVMSNQEAVHIVSSTSNREMSAKRLVDCAARAWKSKKRGIARDDMSAICLFFNASPTEYDRDVNI 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1976767 1981247 + Carg05522-RA Car17g00316 164688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00316 344 Coils Coil 10 30 - -
Car17g00316 344 Pfam Protein phosphatase 2C 73 308 IPR001932 -
Car17g00316 344 MobiDBLite consensus disorder prediction 1 23 - -
Car17g00316 344 ProSiteProfiles PPM-type phosphatase domain profile. 48 331 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01007 Car-Chr12:10047018 Car17g00316 Car-Chr17:1976767 1.04E-154 dispersed
Car17g00316 Car-Chr17:1976767 Car16g00965 Car-Chr16:8036771 2.76E-113 dispersed
Car17g00316 Car-Chr17:1976767 Car05g00962 Car-Chr5:9206584 3.36E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00316 - - csv:101214034 587.8