Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00317 ATGACTGATCGACTCGCTCTCCAATTCGCTCATCGTTCTCTCTGCCTAGGGCAATCCGCTTCGCTTCGCATCCCAATCCGCTCCAAGTTTCAGGTTCAGATTGCGTTGCCTTTCTCTTTCTGTAGTGCGCACTCTCCTCTTTGCTCCGGCTCTAGTCTGGTTCTTCGAAGTAAACTCCGGGAGATATCTCCGATCAACGCGTCGTTGAACAGCGGAATGTCGAACTCCATGGTGAATGAAGCAGAACCGAAGGAACTGCGAGATGAGTCCGATTTTGAAGCCATCTTCTCCGGCGGTGATTTCATTTCCGTTTGTGGCTTTGGTTCTCTGCTCTCTGAGCGGAGTGCGCGAAGTACCTTTCCTGAACTGATCAATTTTAGAGTGGCGAGATTGAACGGCTTCAGACGCGTTTTCGGAAATGTGGCTCCTATATTCTTTGAGCGTGGCATTGCTAAACCTGAAACCAAGGAAATCTCAAGCTTGTGTGCGGAGCCTTGCGAAGGAGAGACTATCACTGTGACGGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTCATACAGAGAGAGATTGAGTTTCGATTTCTAGCTGTTCTACCTGAAACATTAGATGGAAAGCTATATGATAAACCAGCGGTGCTTTGTTCTCGATCAACTGATGAGGAATTTTTCCAAGTGAGATGCAAAGGAAATAAGGACATTTTTCTTCAGCATTATGGTCGTCATAATATTGACAAGATCTGGAGAGATGATATCTTACCTTGTCGCGTCTATCTTCGACATTGTATTTTAGCTGCAAAAAACCTGGGTGAAACAGCTTATAACAACTTTCTGGATCACACTTTCCTTGGAGATCGTAGTACAACCATCCGTGAATACTTAGCCTCTAGTGGTTCAGGCATTATGGAAGAGGAGCCTCCAGAATCCCTCAAGTTCCGATATGGCGGTTGA 951 45.85 MTDRLALQFAHRSLCLGQSASLRIPIRSKFQVQIALPFSFCSAHSPLCSGSSLVLRSKLREISPINASLNSGMSNSMVNEAEPKELRDESDFEAIFSGGDFISVCGFGSLLSERSARSTFPELINFRVARLNGFRRVFGNVAPIFFERGIAKPETKEISSLCAEPCEGETITVTVFEIKKSEIPAFIQREIEFRFLAVLPETLDGKLYDKPAVLCSRSTDEEFFQVRCKGNKDIFLQHYGRHNIDKIWRDDILPCRVYLRHCILAAKNLGETAYNNFLDHTFLGDRSTTIREYLASSGSGIMEEEPPESLKFRYGG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1982179 1984849 + Carg05523-RA Car17g00317 164689

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00317 - - - cpep:111778438 525.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00317 Car-Chr17:1982179 Car08g01120 Car-Chr8:7583269 2.46E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g140 . . . . . . . . . Cmo17g00335 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01774 Chy11g01538 . . . . . . . . . Sed09g0266 . . . . . Car17g00317 Cpe12g00296 . Bhi12g02025 Tan06g2712 Cmetu11g0157 . Hepe03g0077 . . . . . . . . . Lsi09g01458 . . Cme11g02044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003761 0 5 0 1 1 1 2 1 1 3 1 1 1 3 3 2 1 1 2 1 3 1 1 1 1 1 1 2 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00317 Car_Chr17 FPKM 6.161202 7.461621 8.234756 9.102076 7.755712 8.413711 9.247139 11.556534 10.820521 10.970176