Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00321 ATGGAGGCCGATTCCTGGAATGCTCCTTTTCAACTTTCATCGTCTCGACGCTACCGATCTCGTTCCGGTGTGTACCAAGGAGATCACGAAGAAATTGAAGAGGAAAATTCGAGGACTGAGTTTTTGTGCCCGTTTTGCGCCGAGGATTTTGATATCGTAGGTCTTTATTGTCACGTCGATGAGGAGCATCCGGTGGAAGTCAAGAACGCGGTATGTCCCCTATGCACGAAGAAAGTGGGGATGGATATTCGACAGCGAAGATTGCGAAAAATTGGGTCCAATTTGACATTTTCAAAGCTGAGAAAAGAGCTTAGGGAAGGAAACTTGAGATCCCTTCTTGGTGGTTCTTTACACTCTGCCCCCACAAGTACTGAGCCTGATCCCTTGTTGTTTTCTTTTACTTCTAATCTGCCTACATTCAGAAAACCTGCTAGAGTGCAGTCTCAGTCGTCAGCCGAAGTAACTACATCACAGGAAAATCCTAAGGCTCATTCAGAGAGGAGCAGTGTCTCAAGGTTGGCGGCTTCAAATAAGGATGAAAAGGAGAGGGCTCAGAAATGTGAGTTTGTACAAGGGCTGTTGATGTCTACTATTCTTGATGAGTTATGA 609 45.48 MEADSWNAPFQLSSSRRYRSRSGVYQGDHEEIEEENSRTEFLCPFCAEDFDIVGLYCHVDEEHPVEVKNAVCPLCTKKVGMDIRQRRLRKIGSNLTFSKLRKELREGNLRSLLGGSLHSAPTSTEPDPLLFSFTSNLPTFRKPARVQSQSSAEVTTSQENPKAHSERSSVSRLAASNKDEKERAQKCEFVQGLLMSTILDEL 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1999416 2002786 - Carg05527-RA Car17g00321 164693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00321 202 MobiDBLite consensus disorder prediction 144 172 - -
Car17g00321 202 Pfam Stress-induced protein Di19, C-terminal 98 198 IPR027935 -
Car17g00321 202 Pfam Drought induced 19 protein (Di19), zinc-binding 40 85 IPR008598 -
Car17g00321 202 MobiDBLite consensus disorder prediction 144 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00321 - - - bhj:120068362 353.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01125 Car17g00321 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00998 Car-Chr10:9661072 Car17g00321 Car-Chr17:1999416 1.28E-38 dispersed
Car11g01041 Car-Chr11:7856270 Car17g00321 Car-Chr17:1999416 1.54E-50 dispersed
Car13g00700 Car-Chr13:8300150 Car17g00321 Car-Chr17:1999416 1.78E-10 dispersed
Car17g00321 Car-Chr17:1999416 Car17g01009 Car-Chr17:8026020 1.44E-23 dispersed
Car17g00321 Car-Chr17:1999416 Car08g01125 Car-Chr8:7612668 1.68E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g114 . . . . . . . . Cmo08g01223 Cmo17g00338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma08g01252 Cma17g00350 Car08g01125 Car17g00321 Cpe12g00299 Cpe17g00046 Bhi12g01897 . . . . . Lcy12g0775 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010705 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00321 Car_Chr17 FPKM 25.583334 29.265409 8.008551 5.2291 0.0 0.0 0.0 0.0 0.0 0.0