Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00322 CTCTTTTGCTTGTGGGGATATTTGAGCCTTTGGGGAATGGATCCCAGCCACACGAAGGGTACGATGCCTACTTCCACTTCAATTTCTGCTAGAAAGGCTGCCGATATGGGTTGTGATCAGTTCCCGGCGGGCCTTCGCGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTGCAGAATTGCTGCTATGCCGTGACGAAATGCAATCGGGCTGAGATTGCATTATCCATGCTTCGTGAGAACAAAAATGGATTTGATATTGTGTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGTCTGGAGATGGATTTGCCTGTTATCACGCTCAAGAACATATGGCAACATGTGGTTCGGAAGAGAAAGAGCGAATGGAAGGATTTAGAGCAATCCGGAAGCATGGACGATGGAGATCGGGATCAAAATGTATCTGAAGGTGCAAATTATTCATCTTCGGCGTATGATGGAAGTTGGAACAGCTCGAAGAGGAAGAGGGATGCTGAAGAAGAGCTCGAGGAGAGGGACGATACATCGGCGTTAAAGAAGCCGAGGGTGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCGCCACATCCAAGTAATCTGAACAATTCTTTTATGAACCCTCAAGATCATCCTCCTTTTGGGTCAATGGCTTCATCATACAATGGCATTGATCTTCAGACGCTTTTGGTCACCGGTCAACTCTCGCCGCAAAGTCTCGCTGCCCTCCAAGCCACCGGACTTCGTCGACCTACCGCGAAATCTAGCTTACCGATGGCCCTTGTTGATCAGAACAACATATTCAGCTTTGAAAATCCAAAGCTGAGGTTTGGTGAGAACCAAACACAACACCTGAACAACACTAAACCTGTAAGCTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCACCCTTCTGTGCAGACTCAGAGGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGAACATGGCACTCAATATCAAGAGCGAACATGGTGGCACTCAGCTAATGCATTTGTCTCAGCAGCAAACTGTAGGACAGACTCTAAATAACTCTAATGTTACCCACCTACCTGGAATTCCATCGACATTAAGGAACCCGATCATATCAGGTAGCGTTACAACGGGAAACGGGACTGCTGATAATAGCCACGGACCTCGATACAACCTAGTTTCGCCCACGTCGGTTATGGTGAACTATCCAATGAGCCAAACCACAGAAGTGTTTCAAGAAGAAATGAACTCAAATCTAAAAGTATCGAGCGGAGTAATGTCGAGTTATGGTGTTTTTAGTGACTTGCATATGCAGAAATCCCATGACTGGGATTCTCAAAATGTAAGCACTTTGGCCTTTGGTACTCCACACCATGGAAACTTCATTCACCATAGCTTTGATATCTCACCCTCATCTTTGATTCATCACGGTTTTCCTTCAAGCCAAACAAATGGAGAGAATCATAACTCATCAGTCAATGGGAAGACGAACTTTTCGTTTTTGGATTCAACTCAACCCGGGATTCCTCAAAGTGTCGACCATAACTCGTTTTTCGATCCCGGGGAGGTCAAGAACCAGATCATCCCTGATGCAAGCTATCAAACCGACCTGTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTCTCAAACAAGAACAACAAGAAGACAACGGATCGGTCGACTTTAGCGGATACCAAACGGAGAATATTTGTGTTTAG 1857 44.75 LFCLWGYLSLWGMDPSHTKGTMPTSTSISARKAADMGCDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVITLKNIWQHVVRKRKSEWKDLEQSGSMDDGDRDQNVSEGANYSSSAYDGSWNSSKRKRDAEEELEERDDTSALKKPRVKYRLYLRRLSGVSPHPSNLNNSFMNPQDHPPFGSMASSYNGIDLQTLLVTGQLSPQSLAALQATGLRRPTAKSSLPMALVDQNNIFSFENPKLRFGENQTQHLNNTKPVSLFHGIPTKMEPKQLANMQHPSVQTQRNMNMNMNMNMNMNMNMNMNMNMNMNMNMNMNMNMALNIKSEHGGTQLMHLSQQQTVGQTLNNSNVTHLPGIPSTLRNPIISGSVTTGNGTADNSHGPRYNLVSPTSVMVNYPMSQTTEVFQEEMNSNLKVSSGVMSSYGVFSDLHMQKSHDWDSQNVSTLAFGTPHHGNFIHHSFDISPSSLIHHGFPSSQTNGENHNSSVNGKTNFSFLDSTQPGIPQSVDHNSFFDPGEVKNQIIPDASYQTDLLSEDFGQDELLGVFLKQEQQEDNGSVDFSGYQTENICV 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2014483 2019785 + Carg05528-RA Car17g00322 164694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00322 618 MobiDBLite consensus disorder prediction 138 155 - -
Car17g00322 618 ProSiteProfiles Response regulatory domain profile. 46 167 IPR001789 GO:0000160
Car17g00322 618 MobiDBLite consensus disorder prediction 138 191 - -
Car17g00322 618 MobiDBLite consensus disorder prediction 156 171 - -
Car17g00322 618 MobiDBLite consensus disorder prediction 172 191 - -
Car17g00322 618 Pfam Response regulator receiver domain 47 122 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01314 Car17g00322 CCT
Car14g01419 Car17g00322 CCT
Car14g01419 Car17g00322 ECH
Car06g01314 Car17g00322 ECH
Car08g01126 Car17g00322 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00322 Car-Chr17:2014483 Car09g00371 Car-Chr9:2032866 2.41E-42 dispersed
Car14g01419 Car-Chr14:11919856 Car17g00322 Car-Chr17:2014483 5.04E-162 wgd
Car17g00322 Car-Chr17:2014483 Car06g01314 Car-Chr6:9404028 9.95E-171 wgd
Car17g00322 Car-Chr17:2014483 Car08g01126 Car-Chr8:7621855 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5034 PF00072 Response_reg 4.50E-13 CL0304 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00322 - K14491 cmos:111460165 1135.94