Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00331 GCAAGGCCCCGCCAGCCCGACCCAGGTAGACGGCAGCCACCGTCTATTGCTGAGTTCCTGTATAGAGAGAGAGAGAGAACAGGGAGTCAAAAAGAAGACTATAATTGTGCTGCGAATTCTTCCATCTATTTCGGTCCCAAATCAAATTCTGTCCGTAATCAGGAATCATCGATGTCTCTTTCCATGAAAGATGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGATCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCTCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAACCCAACCTTTGTTCGTCGATGTTATTGGCTCCTTGATAAGTCTCTTGAACACGTTGTTCTTGTTCATTACCGTGAAACAAAAGAGAGTTCTCCATCCACGTCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAGCTAATTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTACTCATGTCTATTCTGTTGGTGGAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGGCTCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGACGAACGAGCCTCTCAAACCTGCTATGCCTAAAGAAGATAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAGTGTGGCCAACAAGATCTTCGGGGTGATAACTTCATTTAATAATCCAGTTGAGTCAACTGGGAGTGCCAACAGCATAGGAAGTGTGAATATGTCATTAATGGGTGGTCAAACGAATTTGAATGTTGAGAGTAGGGAATCCATTCCAATTAATTCGTTGGACAATTTGTTAAATAATGGATTGCAAAGTCAGGACAGCTTAGGACAATGGATAAATGAAGTCATCACTGACTCGCCTGGTTCAGTCATTGATCCTGCTATTGAGCCGTCCATTTCATCTGTTCACAATTCCTATTGTGATTCGACATTATATCACCATCAATCTTCGGTGGAGCAAATTTTTAACATAACTGAGGTCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACGAAGATTGTAATCATTGGATATTTTTCTGATGAGTACGTACATCTAGCGAAGTCCAATATATCTGTTGTTTGTGGTGATACTAGTATTGATGCTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTAGAACCACATTCACCGGGACTTGTACATTTATACCTGAGCTTAGATGGTCACAAACCTATTAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACAAGTGCCTGAAGTTACTTCAGAACAGATCCTCAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGATGTTCTCTACATCCAAGAGCTTGAGCATCATGTCGACTAAATTGTCACCCACTGCCCTGAACGACGCCAAGAAACTAGCTGTCAAAACTTCTGGCATTTCTGATGGTTGGATTTATTTGTTAAAATCAGTTACAGAAAATAAAACTCCAATTCCACAAGCAAGAGAGGGTGTTCTTGAGATGATATTGAGAAGCAGGTTGAGGGACTGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCTATAAACTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGGATGGTAGCTGCTCTTTTATCTGTGGGGGCGAAGCCAAGCTTGATCACTGATCCCACATCAAAGAACCCTCTGGGATATACAGCAGCAGATCTTGCATCTATGAACGGTTTTAATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCGCATTTTGAAGACATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGAAACTAGTACAATACCTGATACCACGAACTTTGATAGCGTCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCAGCTTATCGGACAGCAGCTGATGCAGCAGCACGCATACAAGCAGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTGACGCAATTGAACTCTCCACCCCTGAAGCTGAAGCACGTGGTATTATTGCGGCCATGAAAATTCAACATGCCTTCCGCAACTTTGAAACACGAAAAAAAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACGTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGAAGACAGTATCGCAAGATCGTTTGGTCGGTAGGAATTGTTGAGAAAGCTATACTTCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGACTTCAAGTTGCACCAGCTGAAGTGACAGAAGATCAGGAAACTGGCATGGAAGAGGACTTCTACTGCGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTCCGATCAAAGAAAGTACAAGAGGAGTATCGTCGGATGAAGTTAACCCATGCTGAAGCAGCGTTGGAATACGAAGAGCTTTCACATCCTGATATGAAAATGAATGGCTGA 2910 42.3 ARPRQPDPGRRQPPSIAEFLYRERERTGSQKEDYNCAANSSIYFGPKSNSVRNQESSMSLSMKDDVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHVVLVHYRETKESSPSTSMNSNSGSVSNPSANWLLSEELDSRATHVYSVGGNELSEPSDTTTVMAHEQRLHEINTLEWDELLVTNEPLKPAMPKEDKLSCFDQQNQVPISVANKIFGVITSFNNPVESTGSANSIGSVNMSLMGGQTNLNVESRESIPINSLDNLLNNGLQSQDSLGQWINEVITDSPGSVIDPAIEPSISSVHNSYCDSTLYHHQSSVEQIFNITEVSPAWAFSTEKTKIVIIGYFSDEYVHLAKSNISVVCGDTSIDADFVQPGVYRCLVEPHSPGLVHLYLSLDGHKPISQVLNFEYRAPLLQVPEVTSEQILKWEEFQVQMRLAHLMFSTSKSLSIMSTKLSPTALNDAKKLAVKTSGISDGWIYLLKSVTENKTPIPQAREGVLEMILRSRLRDWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFVWSGLSINFRDKSGWTALHWAAYYGRERMVAALLSVGAKPSLITDPTSKNPLGYTAADLASMNGFNGLAAYLSEKALVSHFEDMSLAGNVSGSLETSTIPDTTNFDSVSEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTDAIELSTPEAEARGIIAAMKIQHAFRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGIVEKAILRWRLKRKGFRGLQVAPAEVTEDQETGMEEDFYCVSQKQAEERVERAVIRVQAMFRSKKVQEEYRRMKLTHAEAALEYEELSHPDMKMNG 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2072407 2082999 + Carg05537-RA Car17g00331 164703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00331 969 Pfam IQ calmodulin-binding motif 847 866 IPR000048 GO:0005515
Car17g00331 969 Pfam Ankyrin repeats (3 copies) 619 685 IPR002110 GO:0005515
Car17g00331 969 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Car17g00331 969 ProSiteProfiles Ankyrin repeat region circular profile. 657 682 - -
Car17g00331 969 ProSiteProfiles IQ motif profile. 806 832 IPR000048 GO:0005515
Car17g00331 969 ProSiteProfiles IQ motif profile. 822 849 IPR000048 GO:0005515
Car17g00331 969 Pfam IPT/TIG domain 421 506 IPR002909 -
Car17g00331 969 Pfam CG-1 domain 92 205 IPR005559 GO:0003677
Car17g00331 969 ProSiteProfiles IQ motif profile. 924 952 IPR000048 GO:0005515
Car17g00331 969 ProSiteProfiles CG-1 DNA-binding domain profile. 86 212 IPR005559 GO:0003677
Car17g00331 969 ProSiteProfiles IQ motif profile. 845 869 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01381 Car17g00331 CCT
Car08g01136 Car17g00331 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00743 Car-Chr16:4680164 Car17g00331 Car-Chr17:2072407 3.81E-121 dispersed
Car17g00331 Car-Chr17:2072407 Car17g01328 Car-Chr17:9946059 6.31E-120 dispersed
Car17g00331 Car-Chr17:2072407 Car08g01136 Car-Chr8:7669377 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5038 PF03859 CG-1 6.10E-45 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00331 K21596 - csv:101211298 1496.1