Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00339 ATGGCATTTTGGTGGACTCTGCTTGTAATAGGATTTGCTTACGCGATCTGTAGGTTACTCTTGATGCTCATCCCTCCGAATGTGCCTTCAATCGAAGTTGACGCATCTGATGTGATGGACGACGGTAATCAGACGCAGGAGAATAGCTACATCTACATTCCACCTAGAGTAAGGACACAGCAGCAAGACAAGCGAGTCCAATGTTACGAGCCTGCAACTATGAAATACCTGGGCTATTTTCCTGCATTGTCAAGAGAAGAGGTCAATGATCGTGTTGCTTCAGCCAGGAAAGCACAGAAAGAATGGGCCAAAAGTAGCTTTAAGCAAAGGCGTTTGCTTTTACGCATACTTTTGAAGTATATAATTGAACATCAAGAGCTTATTTGCGAGATCTCCTCCCGTGACACTGGAAAGACAATTGTGGATGCTAATATGGGAGAAATAATGGCAACATGTGAAAAGATTACTTGGCTTCTTTCAGAGGGTGAGAAATGGCTGAAGCCTGAGAGCAGATCATGTGGAAGGGCAACACTTCACAAGAAAGCTCGCGTAGAATTTCATCCCCTTGGAGTTATTGGTGCAATAGTCCCATGGAACTATCCATTTCATAACATTTTCAATCCAGTGCTTGCGGCAGTTTTTGCAGGAAATGGCATTGTAGTTAAGGTTTCAGAACATGCAAGTTGGTCAGGATGCTTCTATGTCAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGTTTGGTCGATGTGATAACAGGGTTTGCTGAAACAGGTGAAGCTCTAGTATCTTCAGTAGACAAAATGATATTCGTTGGATCTACTGGTGTGGGTAGGATGATAATGAAAAGTGCTGCTGAGACACTCATTCCAGTTACTCTTGAGTTGGGTGGAAAGGACGCATTTATCGTGTGTGAGGATGTAGATCTTGATCATGTTGTAAACGTTGCTCTCAGGGCTACTATTACATCAAGTGGACATAATTGTACTGGAGCTGAGAGATTTTATGTCCACAAGAACATTTATTCTTCGTTTGTGGATAAAATATCAGAACGTGTAAAGGCTATTACAGTTGGTCCACCATTAGCTGGGAAGTATGATATGGGTGCCATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTCGTAAATGATGCCTTAGACAGGGGGGCAAAAATTGTTGCTCGTGGAACTTTCGGACATTTACCTGAAGGTGCCGTTGATCAATATTTTCCACCTACCGTTATTGTTGACGTCAACCATACCATGAAGTTAATGCAAGAGGAGGCATTTGGACCAATCCTGCCCATAATGAAATTCAGCACAGATGATGAGGCCGTGAGGCTTGCAAATGATTCAAGATTTGGGCTCGGCTGTGCTGTCTTTTCTGGCAGTCAGCGTCGTGCCAAGAATATTGCTTCGCAGATACGTTCTGGAAGTGTTGCAATTAATGACTTCGCCACAAATTATTTATGTCAGTCCTTGCCATTCGGTGGCGTGAAAGAGAGTGGATTCGGTCGATTTGCGGGCGTTGAAGGATTACGAGCTTGTTGTCTCGTCAAAGCAGTTGTTGAAGATAGGTGGTGGCCATACATTCAGACTAAGCATCCTAAGCCTCTTACGTATCCTGTGGCAGACAATGCTTTCGAGTTTCAAATGTCGCTCGTTGAAGCAACGTACGGGCTGAACATATGGGATCGATTGAGAGCATTGGTCAATGTCCTAAAGATGCTTTCCGAGCAGAACACTCCGGCTAAAGACAACTCTGCCGTTGATGATGGAAGTAAGAGAGCTGATTGA 1812 44.15 MAFWWTLLVIGFAYAICRLLLMLIPPNVPSIEVDASDVMDDGNQTQENSYIYIPPRVRTQQQDKRVQCYEPATMKYLGYFPALSREEVNDRVASARKAQKEWAKSSFKQRRLLLRILLKYIIEHQELICEISSRDTGKTIVDANMGEIMATCEKITWLLSEGEKWLKPESRSCGRATLHKKARVEFHPLGVIGAIVPWNYPFHNIFNPVLAAVFAGNGIVVKVSEHASWSGCFYVRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKSAAETLIPVTLELGGKDAFIVCEDVDLDHVVNVALRATITSSGHNCTGAERFYVHKNIYSSFVDKISERVKAITVGPPLAGKYDMGAICTQEQSEKLQSLVNDALDRGAKIVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDDEAVRLANDSRFGLGCAVFSGSQRRAKNIASQIRSGSVAINDFATNYLCQSLPFGGVKESGFGRFAGVEGLRACCLVKAVVEDRWWPYIQTKHPKPLTYPVADNAFEFQMSLVEATYGLNIWDRLRALVNVLKMLSEQNTPAKDNSAVDDGSKRAD 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2119106 2127692 - Carg05545-RA Car17g00339 164711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00339 603 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
Car17g00339 603 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00339 - - - csv:101209796 1130.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01144 Car17g00339 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00681 Car-Chr16:4327933 Car17g00339 Car-Chr17:2119106 5.78E-43 dispersed
Car17g00339 Car-Chr17:2119106 Car20g00250 Car-Chr20:1444254 1.28E-63 dispersed
Car17g00339 Car-Chr17:2119106 Car08g01144 Car-Chr8:7703369 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g75 . Blo12g00082 Bda03g01176 . Bpe04g01114 . Bma04g01129 . Cmo08g01242 Cmo17g00356 . . . . . . . . . . . . . . Cla06g00431 Cam06g0457 Cec06g0463 Cco06g0462 Clacu06g0444 Cmu06g0445 Cre06g1221 Cone14ag0722 Cone15ag0731 . . . Csa06g01741 Chy11g01565 . . . . . . . . . Sed04g3106 . . Cma08g01274 Cma17g00366 Car08g01144 Car17g00339 Cpe12g00317 Cpe17g00066 Bhi12g01925 Tan06g2751 Cmetu11g1721 Lac11g0932 Hepe03g0048 . Lcy12g0802 . . . . . . . . . . Cme11g02077
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00477 . 6 516 Aldehyde Dehydrogenase Gene Family AT3G24503 66.7 1.3e-205 713.0
Car10g00560 . 1 457 Aldehyde Dehydrogenase Gene Family AT3G24503 65.9 4.8e-187 651.4
Car12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 9.4e-159 557.4
Car11g00103 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.1e-154 542.0
Car11g00103 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 3.6e-257 884.4
Car12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 9.5e-250 859.8
Car05g00003 . 1 545 Aldehyde Dehydrogenase Gene Family AT3G48000 68.0 2.6e-223 771.9
Car11g00477 . 17 516 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 8.8e-155 544.3
Car10g00560 . 18 457 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 7.3e-141 498.0
Car12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 4.8e-169 591.3
Car11g00103 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 5.8e-167 584.3
Car05g00003 . 1 389 Aldehyde Dehydrogenase Gene Family AT1G23800 66.6 2.0e-146 516.2
Car11g00477 . 17 360 Aldehyde Dehydrogenase Gene Family AT1G23800 52.3 4.0e-99 359.0
Car04g01154 . 83 543 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 1.8e-168 589.7
Car09g00694 . 14 338 Aldehyde Dehydrogenase Gene Family AT4G34240 59.6 1.3e-118 424.1
Car02g01035 . 4 185 Aldehyde Dehydrogenase Gene Family AT4G34240 50.5 3.3e-45 180.3
Car04g01154 . 144 541 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 2.5e-165 578.9
Car09g00694 . 10 338 Aldehyde Dehydrogenase Gene Family AT1G44170 64.6 7.0e-131 464.5
Car02g01034 . 1 282 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 8.4e-76 281.6
Car16g00681 . 47 524 Aldehyde Dehydrogenase Gene Family AT4G36250 61.3 3.8e-181 631.7
Car02g01034 . 1 284 Aldehyde Dehydrogenase Gene Family AT4G36250 60.9 5.6e-100 362.1
Car20g00250 . 39 551 Aldehyde Dehydrogenase Gene Family AT1G79440 75.2 3.4e-228 788.1
Car02g00487 . 2 289 Aldehyde Dehydrogenase Gene Family AT1G79440 78.5 8.7e-131 464.5
Car11g01168 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.6 2.7e-245 845.1
Car03g00775 . 211 714 Aldehyde Dehydrogenase Gene Family AT2G14170 59.4 1.9e-166 583.2
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT1G74920 76.2 6.5e-229 790.4
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT3G48170 76.6 2.7e-230 795.0
Car12g01124 . 39 534 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.1e-267 916.8
Car13g00771 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 3.5e-263 904.4
Car17g00339 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 7.0e-278 953.4
Car08g01144 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.1 8.3e-271 929.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007085 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00339 Car_Chr17 FPKM 0.422939 0.0 0.0 0.0 0.0 0.0 0.685508 1.20116 0.888974 1.889331