Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00340 ATGGCTTTGAGCTTGTCCTGCCATGCCGCGCTTCGCCTTCAACATCAAGTGGCTTCCGGAAACCACAGCAACAAGAACCTCGACAATGTAAGACGTCTCGTAAATCGAATTGGAATTGCTTCAGTTCAATCTTCTCCTCTTGAATCGCTTCGAGATGGCAACTGGATCAAGCTTATTTGCGGTGCAAGTTTCGAGGATGTGGTTGATATTAGGAATCTCTCTCTTGTTTACACACTTGCTGGTGTTGATTGTATTGACTGTGCTGCTGATGCCTCGGTTGTTAGTGCTGTGAATGAGGGAATTCAAGCGGCAAGGGATATCGTTGACGTTCGCAGGCCGTGGGTGATGATTAGTGTCAATGATGACCAAGATCTTCACTTCCGCAAAGCTGAGTTTGATCCTGAGAATTGTCCACTTGACTGTTCAAGGCCTTGCGAAATTGTTTGCCCTGCTAATGCAATTTCACTACGGGAAGAAATAATGAACGAGCCTTCTGAAGTGGCCAGTTTGTCTGGAGCATTGAAGGGCGGAGTTATCACAGAGCGATGTTACGGTTGCGGCCGCTGCTCGCCAGTCTGCCCATATGATAAAATAAATCTAGTCACATATGTAAGGGATGCAGCTACTACTGCTAAACTTATAAAACGGGGCGACGTCGATGCTTTAGAGATTCACACCAATGGAAGGCAAACCACTCCTTTTCAAGAACTATGGGATAAATTAGGGGACTCATCCAAATATCTAAGGCTTGTTGCAGTAAGCCTGCCCAATATTGGCGATTTAACAATATCTACAATGAAAACGATGTTCTCGATCATGGAATCACAGCTCCGTTGTTCGAACTTATGGCAGTTAGACGGTCGGCCGATGAGTGGAGATATCGGACGAGGCGCTACAAGGGAAACAATTGCTTTCGCTGCTCAGTTAGCTCTTTCCAATGACCGTCCTCCTGGCTTCCTTCAACTGGCTGGTGGTACAAATTTCTACACTGTTGATGGCTTGAAGAAACAGGGACTTTTTCAATCCACATCAACTCGTAAATCAAATATTTCTCTGCTACATTTAGAGGATTTGATGAACAAAGAGCTATCAAGTTCATTGCATGCATTGATTGGCGGTATCGCTTACGGGGGCTATGCCCGAAAAATAGTTGGAAGGGTCTTGAGTTCAATGCAAGCACAAAGTGGAGATTCCAATATTGAAGACTACCCGGACCATCTCCTGGCTGCACTTGTGGAAGCCTTGGCTTTGGTGGGAACAGTCAAATGCTATGATCCTTCTCTTATCAGCTCAGCAAAAGTTAACAACTCCTCAAGTTTGTAG 1323 45.28 MALSLSCHAALRLQHQVASGNHSNKNLDNVRRLVNRIGIASVQSSPLESLRDGNWIKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIQAARDIVDVRRPWVMISVNDDQDLHFRKAEFDPENCPLDCSRPCEIVCPANAISLREEIMNEPSEVASLSGALKGGVITERCYGCGRCSPVCPYDKINLVTYVRDAATTAKLIKRGDVDALEIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQLAGGTNFYTVDGLKKQGLFQSTSTRKSNISLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIEDYPDHLLAALVEALALVGTVKCYDPSLISSAKVNNSSSL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2128883 2132774 + Carg05546-RA Car17g00340 164712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00340 440 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 183 194 IPR017900 -
Car17g00340 440 Pfam Iron-Sulfur binding protein C terminal 213 419 IPR021039 -
Car17g00340 440 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 128 159 IPR017896 -
Car17g00340 440 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 174 203 IPR017896 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00340 - - - cmos:111460121 813.913
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g65 . . Bda03g01182 . Bpe04g01115 . Bma04g01126 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0721 . . . . Csa06g01740 Chy11g01566 . . . . . . . . . Sed04g3104 . . . Cma17g00367 . Car17g00340 . . Bhi12g01926 Tan06g2753 Cmetu11g0714 . . . Lcy12g0804 . . . . . . . Lsi09g01487 . . Cme11g02078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008411 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00340 Car_Chr17 FPKM 38.272247 47.840839 13.906896 16.218616 4.104129 5.00317 5.661962 37.398949 36.805355 37.759346