Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00344 ATGGGAACTCCACCAGTAGAGGAGCTTCTGAGGAAGATACAAGAGCTGGAGGAAGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCGGATTCCAATTCTGACCACCAAATTCGCCACCATCATCATCACCATCAGCGCTCTCAATCGATATCGCCTCAGCGTTCTAGGTTTGCTACAGCTCGGAGAAGAGGCGGCGCTGCTGGAGGTTTTGACGGCGCTGCAGCGGCGTGGAAGAGAGGCTCTTCGTCGTTTCGATATTCTTCTCCACTTCAGAGAGAGAGTAGGACTTGTGAGCCTTTAAATGCCGCCGCCAGTGTCGGAACCGGCGGCGGCTCTGGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAATTATCGCATAATTTATTGGAACCGAGCTGCTGAAAGCGTGTATGGATATTCTGCGGTGGAGGCTCTTGGTCAGGACGCCATTGAGCTTCTAGTCGATCCTGAGGACTTCGCCGTTGCGAATGATGTAACTCTTCGTGTCATGGGTGGGGAGAATTGGACTGGTCAATTACCTGTAAAGAACAAGATGGGGCAAAAATTTATGGTTGTTGCCACTAACACTCCATTCTATGACGATGGTGCACTGGTTGGGATTATCTGTGTATCAAGTGATTCACGGCCATTTCAAGAATTGAAGATTCTTTTAGCATCAGGTTCTAAACCGCAGGATGCAGATTCGAACACGATTCGTTCAAGAATCCCGGTTTCAGCTAAACTTGGTCTTGATCCTCAGCAACCTCTTCAAGTTGCAATTGCTTCAAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGTTTGGATCGTGAAGGTGGAAGTGCAGATAGTTACCACTCTGATCATGGCTTTCCAGATGCAGTTCTTTGTGACCATCGGGAGGATGCAAATTCAAGTGGAGCTAGCACGCCTCGGGGCGATTCCACGGCTCATGGTGCGTTGTCCCATGTTGAGGAGAAGTTGTCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTGCAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAAGCAGAAGAGTGGATCACTAAGAAAGGCATATCTTGGCCATGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAGAACAACCCGTATTGTTTGGCCCTGGGTACAAATTGATCAAGAAGCTGAACCACCAAATCATAAAAGTTCTTCTTCATCTGGGAAACCAGAAATGCAGCAAAACGATGGTCATCGAGCAGTCAATAACGAGGCGTCGGGATCTTGGTCATCATTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTGCCAGTAGTAGTGCTATCAACAAGGTTGACACGGACTTTGACTGCTTGGATTATGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCGGACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAACATTCTTCTCTTCATGGGAGTTGTGACTTCACCTCAGCGTCTCTGTATTGTCACAGAATTTCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACGGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACGTTGCGAGAGGCATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCTTCGAACCTCTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACGACTAAGACCGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCTGACATATACAGTTTCGGAGTCATATTGTGGGAGCTTGCAACCGAGAAAATCCCTTGGGAAAATCTCAATACAATGCAGGTGATTGGTGCTGTTGGGTTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCACAGTGGGCTTCTATTATTGAAAGCTGCTGGCACAGTGAACCCGCAAACCGGCCATCATTCCAGGTTCTGATGGAAAGGCTTAGAGAACTGCATAGAAAGTTTACTATTCAATTACAAGCAGCCCGTAACGGTGGAGACAATATCAGTCAAAAGGAAACATAA 2352 46.39 MGTPPVEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIRHHHHHHQRSQSISPQRSRFATARRRGGAAGGFDGAAAAWKRGSSSFRYSSPLQRESRTCEPLNAAASVGTGGGSGPAAVNFTNKQYLNILQSMGQSVHIFDLNYRIIYWNRAAESVYGYSAVEALGQDAIELLVDPEDFAVANDVTLRVMGGENWTGQLPVKNKMGQKFMVVATNTPFYDDGALVGIICVSSDSRPFQELKILLASGSKPQDADSNTIRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSADSYHSDHGFPDAVLCDHREDANSSGASTPRGDSTAHGALSHVEEKLSGKLVRDSGDEVAGKPTIQKILSSKAEEWITKKGISWPWKGTEQEGGSETRTTRIVWPWVQIDQEAEPPNHKSSSSSGKPEMQQNDGHRAVNNEASGSWSSFNVNSTSSVSSCGSASSSAINKVDTDFDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFGQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDVARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNTMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWHSEPANRPSFQVLMERLRELHRKFTIQLQAARNGGDNISQKET 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2156736 2162011 + Carg05550-RA Car17g00344 164716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00344 783 ProSiteProfiles Protein kinase domain profile. 505 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00344 783 MobiDBLite consensus disorder prediction 432 461 - -
Car17g00344 783 MobiDBLite consensus disorder prediction 303 328 - -
Car17g00344 783 Pfam Protein tyrosine and serine/threonine kinase 505 757 IPR001245 GO:0004672|GO:0006468
Car17g00344 783 MobiDBLite consensus disorder prediction 427 461 - -
Car17g00344 783 Pfam PAS fold 131 236 IPR013767 GO:0006355
Car17g00344 783 MobiDBLite consensus disorder prediction 303 321 - -
Car17g00344 783 Coils Coil 6 26 - -
Car17g00344 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Car17g00344 783 ProSiteProfiles PAS repeat profile. 128 199 IPR000014 -
Car17g00344 783 MobiDBLite consensus disorder prediction 35 79 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g01146 Car17g00344 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00344 Car-Chr17:2156736 Car13g00831 Car-Chr13:8993799 3.08E-108 dispersed
Car17g00344 Car-Chr17:2156736 Car08g01146 Car-Chr8:7718281 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89469 PF07714 PK_Tyr_Ser-Thr 1.40E-68 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00344 - - bhj:120067055 1343.56