Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00349 | ATGGCGTCATCTGTTCATTCGAACTCCGATCGCGCGCGGGAGTCTTCAAGGAGGCAGAAGAAGAAGAAAAGCCACGGCAACAGAGATCATCATCAAAACCAGAACCATATTAAATGGAAGTCTCAAGCGCAGCAAGAAATTTACTCGTCCAAGCTGGTCCGAGCATTGAATCAAGTGAGGCTCAGTCCTCCGAACGAGGCGCCGCGCCGCGGCAGAGCCGTACGCGAGGCCGCTGACAGAGTCCTCGCCGTCGCTGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATCTTAACGAACAGGCTGAAACTCAAATTCAGGAAGCCGAAAAGACAGAGATCGGCATCCACCGCCGGAAACAACCGCTCAAAGAAACCTAGAGTTAGCGTATTGCGGTTGAGAGGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCCGGTTGCCGGAAGGAACCGTTGCCGGTTATCCTGGAAGAGGCTACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCCATGAGTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGCCGCAGGCTCTAGCTCCGCCCCACCAAACTGA | 609 | 54.84 | MASSVHSNSDRARESSRRQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLSPPNEAPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSAPPN | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2200180 | 2200788 | + | Carg05555-RA | Car17g00349 | 164721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00349 | 202 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 14 | 201 | - | - | |
| Car17g00349 | 202 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Car17g00349 | 202 | MobiDBLite | consensus disorder prediction | 104 | 127 | - | - | |
| Car17g00349 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 143 | 190 | IPR036638 | GO:0046983 | |
| Car17g00349 | 202 | CDD | bHLH_AtIBH1_like | 129 | 184 | IPR044549 | GO:0006355 | |
| Car17g00349 | 202 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 14 | 201 | IPR044660 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00973 | Car-Chr12:9812667 | Car17g00349 | Car-Chr17:2200180 | 1.95E-45 | dispersed | |
| Car14g01393 | Car-Chr14:11768185 | Car17g00349 | Car-Chr17:2200180 | 9.04E-85 | wgd | |
| Car17g00349 | Car-Chr17:2200180 | Car05g00940 | Car-Chr5:9063250 | 4.56E-43 | wgd | |
| Car17g00349 | Car-Chr17:2200180 | Car06g01333 | Car-Chr6:9562395 | 7.42E-82 | wgd | |
| Car17g00349 | Car-Chr17:2200180 | Car08g01152 | Car-Chr8:7741711 | 9.41E-130 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00349 | - | - | csv:101220618 | 316.62 |