Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00350 | ATGGAGGAGGTGAAGAAGGAAGAAGAATTGAGAAAAGGCGATCAGAATTTGATGGGAAATTCCGGATTATTATTCGACATCCCATTAATGGATTTATTGGCCGGACAAGATTTCACCCCTTCCTTGTTCGATCTCTTGTCGGCTGCGCCACCCACTACCACTCTTCCTCCGCCGTCCTCCGCCGTGCCGGAGTCATCCGAAGTTCTCAACACCCCTCCTACTCCCAACTCCTCCGTCTCTTGCTCCTCCAATGAAAAGGTTTTTGACGCCGACGACGGCGATCTCCGGGAGAAATCCCCTTTCAACAAGCAATTAAAAGTGAAAAAAAAGAATCAAAAAAGGGTAAGAGAGCCGAGATTTGCGTTCATGACTAAAAGCGAAGTGGATCATCTCGACGACGGCTATAGATGGCGGAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCTAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTTAAGAAACGTGTCGAACGTTCCTCCGATGACCCTTCTGTCGTCGTTACCACTTACGAAGGCCAACACATCCATCAAAGCCCAATCATGCCACGTGGAGCTTTATCAGTCGCCGCCGCCGCCGCCGCCTTCGCCTCACCGCAACCGTCTCTTGTTTTCCCACAGCCGCAATATACGTACACTCCGGCGCCGCCAGTGGATGTTCGATTTGATGCGGCGTTTCATAGTTTTGGAGAAGAACGACGTCGTATTGAGGGATCTTTCCAAGACCATGGCCTTCTGCAAGATATGATCGTACCGTCCTCCGCCTTACACATCCCGGAAGAAGAATAG | 822 | 50.61 | MEEVKKEEELRKGDQNLMGNSGLLFDIPLMDLLAGQDFTPSLFDLLSAAPPTTTLPPPSSAVPESSEVLNTPPTPNSSVSCSSNEKVFDADDGDLREKSPFNKQLKVKKKNQKRVREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHIHQSPIMPRGALSVAAAAAAFASPQPSLVFPQPQYTYTPAPPVDVRFDAAFHSFGEERRRIEGSFQDHGLLQDMIVPSSALHIPEEE | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2214403 | 2215310 | + | Carg05556-RA | Car17g00350 | 164722 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00350 | 273 | ProSiteProfiles | WRKY domain profile. | 126 | 191 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Car17g00350 | 273 | MobiDBLite | consensus disorder prediction | 53 | 95 | - | - | |
| Car17g00350 | 273 | MobiDBLite | consensus disorder prediction | 59 | 85 | - | - | |
| Car17g00350 | 273 | Pfam | WRKY DNA -binding domain | 132 | 189 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g01335 | Car17g00350 | CCT | |
| Car14g01391 | Car17g00350 | CCT | |
| Car14g01391 | Car17g00350 | ECH | |
| Car06g01335 | Car17g00350 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00251 | Car-Chr1:1394431 | Car17g00350 | Car-Chr17:2214403 | 1.98E-23 | dispersed | |
| Car03g00368 | Car-Chr3:4515984 | Car17g00350 | Car-Chr17:2214403 | 3.93E-22 | dispersed | |
| Car03g00946 | Car-Chr3:7357790 | Car17g00350 | Car-Chr17:2214403 | 4.63E-37 | dispersed | |
| Car05g00383 | Car-Chr5:2195877 | Car17g00350 | Car-Chr17:2214403 | 1.19E-49 | dispersed | |
| Car08g00389 | Car-Chr8:2519785 | Car17g00350 | Car-Chr17:2214403 | 7.25E-16 | dispersed | |
| Car08g01156 | Car-Chr8:7759904 | Car17g00350 | Car-Chr17:2214403 | 5.92E-90 | dispersed | |
| Car11g01645 | Car-Chr11:12951829 | Car17g00350 | Car-Chr17:2214403 | 3.57E-49 | dispersed | |
| Car12g00090 | Car-Chr12:398653 | Car17g00350 | Car-Chr17:2214403 | 1.18E-46 | dispersed | |
| Car12g00603 | Car-Chr12:3991504 | Car17g00350 | Car-Chr17:2214403 | 1.99E-32 | dispersed | |
| Car14g00854 | Car-Chr14:5036983 | Car17g00350 | Car-Chr17:2214403 | 2.53E-50 | dispersed | |
| Car17g00350 | Car-Chr17:2214403 | Car19g00856 | Car-Chr19:8938314 | 3.45E-49 | dispersed | |
| Car17g00971 | Car-Chr17:7838159 | Car17g00350 | Car-Chr17:2214403 | 1.53E-46 | dispersed | |
| Car20g00950 | Car-Chr20:10898379 | Car17g00350 | Car-Chr17:2214403 | 3.39E-36 | dispersed | |
| Car14g01391 | Car-Chr14:11753466 | Car17g00350 | Car-Chr17:2214403 | 1.05E-74 | wgd | |
| Car17g00350 | Car-Chr17:2214403 | Car06g01335 | Car-Chr6:9575672 | 3.27E-59 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5039 | PF03106 | WRKY | 2.50E-26 | CL0274 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00350 | - | - | csv:101205991 | 333.954 |