Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00351 ATGAACCATCAAGACAGTCGCTGGAGCCCCAATAACTTCCGTGGCGGCGTTTCCGGAGGTAACCGTCGGCCTTTCGACAGCCCGCCGCGCTTCTCTACTCCCGGTGCTGCTAATTTTCGCCCTATGGGAACTGGCGGGGGGTTCCGTCCAATTCCTGGTACTGGCGGTGGTTTTGGGTCCAGTTTCCAGCCGCCTCCTGTTGCAGGACAGAAACGGGGCTATCCTTTCGCCGGCCGTGGAAGTTCTCCAGATCATTCGGACAGAAGCAGTTTTGCCAAGCTGTTTGTTGGATCCGTTCCAAGGACAGTTACAGAAGAAGATATTCGCCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGTAAGCATAACCTCTATTTTTATGAGGCACATGGATTGTTTTGTTGCCTTGTTGATGATATCTTCATTTTTATCCAAGCAAATGGAGGAAGACCCGTCATTCAAATCAGAACATCCTTTACTTATGCAGGATGTTGTTTTGTAAAATATACAACCCCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCAGGCCCAATTCAAGTTCGATATGCTGATGGAGAGCAGGAGCGTCTCGGTGCAGTTGAGTTCAAATTGTTTGTTGGTTCACTAAATAAACAAGCCTCAGAAAAAGAAGTCAAGGAAATCTTTTCTCCATATGGAGTAGTTGACGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACAAAGGGATATGGCACTGGCGGCTATAAATGCACTTAATGGAAGGTTTACAATGGGAGGTTGTGATCAACCATTAAGCGTTCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCGGGTTTTGGTTCTCGCTTTCAAGCACCTGGTCCGAGCAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCGAGTTCCAATCGATGTACGAGGTTTCAGGCCACCTGTTGATGCTGGTGCTTTTCCCTTTGGGGGTCAGTTGCCTCCTAGGTCCAGTGAAATGGGACTGCCTTTGAACTTGAATCTTTATCAGTCTGCCAGCCAGCATCCATCACTTGGCCTCCAAGCATCACCCGTGCTAAAGGCCGTTCAGTCAACAACACAGTTGCCACCGTCAAGTCAATTGCACCCTCATGGTCCTTCCTATTCTCAGCCACATTCAACTGCAGCATTATCACAACAGCATAATCAACCACAAAATTTCAACTCTTCTGGTCGACTGCCGTTCAGTCAGCCCGCACCTTCCCAAGAGTTACCTAGCATTGGTGCACAGTTTCCGGTATCTCAGGCTATGGTCCAGCCGGGTGCCTCATCAGCTGCAGCTACACAAACTCCTTTGAGTATGAACTTACAATCCCATGCTGCTGCCCCTAATCAACAGCAACGTCCTACACCGATTCAGCCACGGCAGAATTCACCTTCTCAGTTAGCACACATGTTGTCACAACAAAAACAAACTCTCCATGCTAGTTTCCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGCAGTTGCAGTCGATACAACCATCAAATCAAAGCTCAACGTTGCAGCCGAGTTCCCGGACTATTAATCAGCAGTCTCACTGGACAGGGGTTGTGCCACACACAGCCACCAGTGCCACTTCTGCAACATCAGATACACATAAATCTACAGTTCCTCCTGTAGCTATAAATACCAGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAATAGTGTTACTGGTGAGAGTAAGTGGGAGAGACCTCAAGAGCTTTCGGCGATCGAGCAACAACAAAAGCCACCAGTAATGCAGCCTCTTAACCAGTCACGTCCTCAACTACTACCTACCCAGCAACTCTCTCAAACTCCCCAAGCCCAGCTTCAAACTCGGTTCCAGACACCGACGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGCACTTATACAAAATTGCAGACAGCTAATAGCTCGGTAAATGATCCTACTCGCTTCCACCAGAACTATTTGGTCTTCAGGAGCTCGAAATGGATCAATGAGATCTACAGGTCCGCTGGTGCATCTGCCATTGAAGTTGTGAGATGA 2229 47.69 MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEHGNVIEVALIKDKRTGQQQGKHNLYFYEAHGLFCCLVDDIFIFIQANGGRPVIQIRTSFTYAGCCFVKYTTPEEADRAIRNLHNQHTLPGGAGPIQVRYADGEQERLGAVEFKLFVGSLNKQASEKEVKEIFSPYGVVDDVYLMRDEMKQSRGCGFVKYSQRDMALAAINALNGRFTMGGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPSRPMPNFGEFMGDRVPIDVRGFRPPVDAGAFPFGGQLPPRSSEMGLPLNLNLYQSASQHPSLGLQASPVLKAVQSTTQLPPSSQLHPHGPSYSQPHSTAALSQQHNQPQNFNSSGRLPFSQPAPSQELPSIGAQFPVSQAMVQPGASSAAATQTPLSMNLQSHAAAPNQQQRPTPIQPRQNSPSQLAHMLSQQKQTLHASFQSSQQAFSQLQQQLQSIQPSNQSSTLQPSSRTINQQSHWTGVVPHTATSATSATSDTHKSTVPPVAINTSNWTEHTSPDGYKYYYNSVTGESKWERPQELSAIEQQQKPPVMQPLNQSRPQLLPTQQLSQTPQAQLQTRFQTPTPHPQPLQQPSFHSQEGTYTKLQTANSSVNDPTRFHQNYLVFRSSKWINEIYRSAGASAIEVVR 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2219831 2229706 - Carg05557-RA Car17g00351 164723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00351 742 MobiDBLite consensus disorder prediction 306 336 - -
Car17g00351 742 MobiDBLite consensus disorder prediction 1 88 - -
Car17g00351 742 MobiDBLite consensus disorder prediction 409 464 - -
Car17g00351 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 134 IPR000504 GO:0003723
Car17g00351 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 293 IPR000504 GO:0003723
Car17g00351 742 Pfam WW domain 605 632 IPR001202 GO:0005515
Car17g00351 742 MobiDBLite consensus disorder prediction 1 16 - -
Car17g00351 742 MobiDBLite consensus disorder prediction 661 691 - -
Car17g00351 742 MobiDBLite consensus disorder prediction 495 570 - -
Car17g00351 742 MobiDBLite consensus disorder prediction 582 614 - -
Car17g00351 742 ProSiteProfiles WW/rsp5/WWP domain profile. 605 634 IPR001202 GO:0005515
Car17g00351 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 216 IPR000504 GO:0003723
Car17g00351 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 306 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00351 - - - cmos:111460217 1220.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00250 Car-Chr1:1385420 Car17g00351 Car-Chr17:2219831 1.46E-10 dispersed
Car08g00338 Car-Chr8:2180725 Car17g00351 Car-Chr17:2219831 1.32E-44 dispersed
Car14g00856 Car-Chr14:5043007 Car17g00351 Car-Chr17:2219831 8.98E-13 dispersed
Car17g00351 Car-Chr17:2219831 Car17g01072 Car-Chr17:8337407 2.25E-43 dispersed
Car17g00351 Car-Chr17:2219831 Car08g01154 Car-Chr8:7749454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00351 Car_Chr17 FPKM 22.660414 22.889078 20.790363 21.976793 16.87512 17.084557 16.323822 18.511208 17.499147 18.007147