Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00358 ATGGTGAAGGTACGCATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCCGAAAGTTGATAGGCATGCGATGCGCCAATGTCTATGATCTCTCACCCAAGACATACATGTTCAAGCTTATGAACAGTAGTGGAGTCACTGAATCGGGTGAGAGTGAGAAGGTGTTGCTGTTGATGGAAAGTGGAGTCAGACTACATACGACGGAATATGTTCGAGACAAAAGCAATACTCCTTCTGGTTTCACTCTCAAACTAAGAAGGCATATACGCACAAGAAGGCTTGAGGATGTGCGGCAACTTGGATATGATCGGATCATCCTATTTCAGTTTGGGTTAGGTGCTAGTGCACACTATGTTATCTTGGAGCTGTATGCCCAGGGTAATATCCTTCTTACGGATTCTGAATTTATGGTCTTAACTCTTCTTCGATCTCACAGGGATGATAATAAGGGGGTAGCAATCATGTCACGACATCGATATCCAACTGAAATTTCTCGAGTGTTTGAGCGGACAACGGCTGCAAAATTGCAGGAAGCACTCACTCTGAGTGACAATGTAGTTAACCTAACTGGTAACGAAAATAATGAAACAGATCCTTCAAAGCAACAGCCGGGTAACCACAAGGTCTCGAAGCCTTCTGTCTCAAGTAAAGCCCAAGGTGATGGCAGTCGAGCCAAACAGACTACTTTGAAAGCTGTTCTTGGGGAGGCACTGGGATATGGAACTGCGCTGTCTGAGCACATTATATTAAATGCTGGTCTGATTCCAAATATGAAACTTTGTAATGATAATAAACTTGATGATGGTAGTCTTCAGCTCTTAGTGCAAGCTGTTGCAAATTTTGAGGATTGGCTGGAGGATGTAATATTTGGTACTAGAGTTCCTGAAGGGTACATTTTGATGCAAAAGAAAAATGTTAAAAAAGAAGAATCTGAGGCTTCAACTGATAGCGAGATCTATGACGAGTTCTGCCCAATTTTATTAAACCAATTCATGTCTAGAAAGTACACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAATTCTACAGTAAAATTGAGAGTCAAAAGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCTGCAACTCAAAAACTCAATAAAATACGCATGGATCAGGGAAATCGTGTAGAGATATTAAAACAAGAAGTTGATCATTGTGTCAAAATGGCAGAATTAATAGAATATAATTTAGAAGATGCGGATGCTGTTATATTAGCCGTCCGTGTTGCTCTTGCTAAAGGCATGAGCTGGGAGGATCTTGCACGAATGGTGAAGGAAGAAAAGAAATCTGGAAATCCAGTGGCCGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGCAACAATCTTGATGAAATGGATGATGATGAAAAGACACAACCAGCTGATAAGGTAGAGGTGGATATATCACTTTCAGCTCATGCCAATGCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACTATTACTGCACATGAAAAAGCTTTTAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAAAAGTTGCCACGATATCTCATATGCGCAAAGTTCATTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGACGTGATGCTCAGCAAAATGAGATGATAGTTAAACGTTACATGTCAAAGGGAGATTTGTATGTCCATGCTGATTTGCACGGAGCTTCTAGCACTGTGATTAGGAATCACAAGCCTGAACAACCAGTGCCTCCACTCACGTTGAACCAAGCAGGATGTTTTACGGTTTGTCATAGCCAGGCATGGGACTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGCAAAACTGCTCCTACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTCGTGGAAAGAAGAATTTTCTTCCTCCACATGCTCTTGTCATGGGTTTTGGATTGTTATTTCGCTTGGATGAGAGCTCTTTAGGTTCACATTTAAATGAAAGGAGGGTAAGAGGTGAGGAGGATGGAGTGAATGATGTTGAAGAAAATGAACCTCTTAATGAACAATCTGATACTGAATATGAGAAGAGGGAATCAGAACAAGTATCCAATACATCTGCCAATTCAGATAGACTAGTTATACCTAACTTACCTGGACCTGCGGGCACTGAATCACTTGACATTCCCGTTGAAGATAGAATGGCTTTGAATGGTGTCAATAAGGATAACCAACCTGATGTTACAGATAGTGTTTCCCTTGTCACACCACAACTTGAAGATCTCATGGATAAAGCTCTTGAGCTTGGATCTGGCACTGCATCTAGCAAAAATTATATATTAGAGACTTCTAAGGTTGATTTGGTCGATGGACCACATCCAGATGATAACAATGCTGCAGTGAGAGAGAAACCCTACATCTCAAAAGCTGAAAGAAGAAAACTTAAGAAAGGTCAGAATAGCAGTTCTACAGACAGCAACATCAAGCAGGAAAGTGAGCAATCAAGAGATGTTGATGTTTCTTTGAATCATCCTCCAAACAAGGTTAATAATCCAAAGTCTGGTTCTGTAAAAATCAGCCGTGGTCAGAAGGGTAAACTGAAGAAAATGAAAGAAAAATATGCTGATCAAGATGAAGAAGAAAGAAGTATCCGCATGGCTTTATTGGCATCCTCAGGTAAGCTACCGAAAAATGAAGGGCCACAAAATGTGAAGGAAACAGCTTCTGAAGTGAAGAAACGTGATGGAGGCGCCGAAGAGGCTCCAAAAATATGCTACAAATGTAAGAAGCCAGGTCACTTGTCTCGAGATTGCCCCGAACATCCTGATAATCTTTCACATAGTCACTCGAATGGTGCAACGCAAGACGATCGCCAAGTGGCATTGGACGATGATGCTGAACTGGACAAAATAACTATGGAAGAGGATGATATTCATGAAATAGGTGAAGATGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGACATCCTTTGCCTACCGACATTATCTTGTATGCTGTGCCGGTGTCTGCAAAAACTGCCATGAACCTGTTCGCGCACATGCCCGAAGCAACAAATAGAGAGAAAGAACTGATTAAAGCATGCACAGACCCAGAGCTGGTGAGCGCGATCATCGGGAATGCTCGGGTTACAGCGGCGGGTCTCACTCAGTTAAAGCAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAACAAGGAGCTGCTGCTAGCTAG 3303 41.84 MVKVRMNTADVAAEVKCLRKLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRRHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNILLTDSEFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTTAAKLQEALTLSDNVVNLTGNENNETDPSKQQPGNHKVSKPSVSSKAQGDGSRAKQTTLKAVLGEALGYGTALSEHIILNAGLIPNMKLCNDNKLDDGSLQLLVQAVANFEDWLEDVIFGTRVPEGYILMQKKNVKKEESEASTDSEIYDEFCPILLNQFMSRKYTKFETFDAALDEFYSKIESQKSEQQQKAKESSATQKLNKIRMDQGNRVEILKQEVDHCVKMAELIEYNLEDADAVILAVRVALAKGMSWEDLARMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMDDDEKTQPADKVEVDISLSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKKVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIRNHKPEQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHALVMGFGLLFRLDESSLGSHLNERRVRGEEDGVNDVEENEPLNEQSDTEYEKRESEQVSNTSANSDRLVIPNLPGPAGTESLDIPVEDRMALNGVNKDNQPDVTDSVSLVTPQLEDLMDKALELGSGTASSKNYILETSKVDLVDGPHPDDNNAAVREKPYISKAERRKLKKGQNSSSTDSNIKQESEQSRDVDVSLNHPPNKVNNPKSGSVKISRGQKGKLKKMKEKYADQDEEERSIRMALLASSGKLPKNEGPQNVKETASEVKKRDGGAEEAPKICYKCKKPGHLSRDCPEHPDNLSHSHSNGATQDDRQVALDDDAELDKITMEEDDIHEIGEDEREKLNDVDYLTGHPLPTDIILYAVPVSAKTAMNLFAHMPEATNREKELIKACTDPELVSAIIGNARVTAAGLTQLKQKQKKGKKSSKQGAAAS 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2288150 2297793 + Carg05565-RA Car17g00358 164730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00358 1100 MobiDBLite consensus disorder prediction 690 747 - -
Car17g00358 1100 MobiDBLite consensus disorder prediction 861 880 - -
Car17g00358 1100 Pfam NFACT N-terminal and middle domains 226 540 - -
Car17g00358 1100 Pfam NFACT N-terminal and middle domains 10 161 - -
Car17g00358 1100 MobiDBLite consensus disorder prediction 828 941 - -
Car17g00358 1100 ProSiteProfiles Zinc finger CCHC-type profile. 947 962 IPR001878 GO:0003676|GO:0008270
Car17g00358 1100 MobiDBLite consensus disorder prediction 190 227 - -
Car17g00358 1100 MobiDBLite consensus disorder prediction 1081 1100 - -
Car17g00358 1100 Pfam NFACT protein RNA binding domain 548 659 IPR008532 -
Car17g00358 1100 MobiDBLite consensus disorder prediction 959 978 - -
Car17g00358 1100 MobiDBLite consensus disorder prediction 891 907 - -
Car17g00358 1100 Pfam Zinc knuckle 946 962 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00358 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - csv:101208866 1886.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g211 . . . . . . . . . Cmo17g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01596 . . . . . . . . . . . . . Cma17g00388 . Car17g00358 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00358 Car_Chr17 FPKM 13.936428 15.418283 20.528923 19.148626 15.02982 15.755193 15.702997 17.835115 18.245533 17.480379