Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00365 ATGAATGTAGCGTCTGCAGGAAGTCACGATCAAGGTCAAAAGATAGCTGCTGCTGCTTACCTTAAAAATTTGAGTAGGAGAAATACTGAGGGCGAATTTCCATGTTCAAAAGTCAGCAAGGGGTTCAAGGATGAACTGCTGAGAGCGTTGTTCCAAGCGGAACCAAAAGTTCTAAAAGTTTTGGTTGAAGTGTTTCACAGCATAGTGGTCAGCGAGTTTGTGAAGCAGAGCTCATGGCCTGAACTTGTGTCTGATCTTTGCTCTGCTATTCAAAACAGCAATCTTTTCAACAATGGAGCCAAATGTCAATGGAATGCTATCAACGCCCTGTCTGTTCTCTGTACAACGTGCAGACCTTTCCAATACTTTTTGAATCCTAAAGATTCTAAGGAGCCCGTACCACCACAGTTAGAGCTACTTGCAAACACGATTATTGTTCCCTTGCTAGCTGTATTCCATCGTCTTGTTGAACAGGCTCTTTCTAACCATGATGGAAGGGAAGTTGAGATAGATAAGATTCTTTCAATAGTATGCAAATGTGTCTACTTTTCTGTGAGATCGCATATGCCTTCTTCTTTGGTGCCTCTACTTCCATCGTTTTGCCACGATTTAATTAGCATTCTAGATTCCATAAAATTTGAGGCTGCAGTTTCCCCAGAGTATGGCAATGTGAGCAGGTTGAAAACTGCGAAGAGAAGCTTGCTTATTTTCTGCGTCTTTGTTACCCGACACCGAAAGCATACTGATAAGTTGATGCCACACATCATAAAATGTGTCTTGAACATTGTGAATTATAGCAAAAATGCTCATAAGCTCGACTTTTTATCAGAGAGGATTATTTCGCTAGGCTTTGATGTGATTTCACATGTTCTGGAGACGGGGCGAGGATGGAGGCTGGTTTCTCCGCACTTTTCAACATTGATACACTCTGGAATATTTCCATCCCTTATAATGAACGAGAAGGACGTTTCTGAGTGGGAAGATGATCCAGATGAGTACTTAAGGAAGAATCTTCCATCTGACCTAGAAGAAGTTTCTGGTTGGAGGGAGGATTTATACACAGCCAGGAAAAGTGCAATAAACTTGCTCGGCGTTATTGCATTGTCGAAGGGGCCTCCCACAGTGACCCATATGAATGGTTCTTCAGCTTCATCAAAGCGTAAAAAAGGCAGCAAGAGAACAAATAATCAATGCGCTACTATGGGGGAGTTGGTTGTACTTCCATTTCTTTCGAAATATCCTATTCCCTCTGATGCAAACGCTTCCCAAACCAGTATTCAAAATAGTTACTATGGTGTTCTAATTGCGTATGGTGGTTTGCTTGATTTTCTAAGGGAGCAACAACCTGGATACGTGACGTTTCTAATCCGCACAAGAGTGTTGCCTCTATATGCTGTGTCGATGTGCCTGCCATATTTAGTTGCTTCTGCAAATTGGGTACTTGGAGAGCTTGCATCCTGCCTGCCTGAAGAGGTCTGTGCCGAAATATATTCTTCATTGGTTAAGGCATTATCCATGCCTGATAAGGAGGAAGTTTCGTTTTACCCTGTCCGAGTCTCTGCTGCTGGAGCAATAGCCAAGCTTCTTGAAAATGACTACTTGCCACCTGAGTGGTTACCTCTTCTTCAAGTTGTCATAGGTGGGATTGGCCAAGATGATGAAGAGAACTCCATTTTGTTTCAGCTTCTCAGTTCCATTATGGAAGCTGGTAATGAAAACGTCGCCATCCATATTCCTCACGCTGTTTTGTCTCTGGTTGGTGCAATCTCAAAAAGCATACCTCCTAATTTGGAGCCATGGCCTCAAGTTGTTGAACGTGGGTTTGCAGCTTTATCAGTGATGGCTCAGTCTTGGGAAAACTTCATACTTGAGAAAACTGAGCAAGATGCATCATGTGAATGGTCAACATCGGAGCAAGCCACAATCAGTAGATCATTCTCGTCTCTCTTGCAGCAGGCGTGGCTTGCACCCATGTACTCATTGTTGTCCCAGGAAATGGATGAAGATCAGGAATTGTTGCCCCCTCCATCATGCATAGATCATTCATCAAGGTTGCTTCAGTTCATCATGGTGTCTGTTACAGGGAGCAATACTATTTCAGAGCTTAAAGTATCTGAATTAGTATCAGTCTGGGCTGATCTTATTGCAGACTGGCATTCTTGGGAAGAATCAGAGGATTTCTCAGTCTTTAATTGTATTATGGAAGTTGTTAGATTAAATAACAAATATGCACTGAAGAACTTTTTTGTGAAGCCAACACCATCTCCTCCAGCTCCGCCAGTGCCTCGACGGTCTATTGTAGAAAACATTGGAGCTTTCATTAATCAGACAATCTCACAATATCCATCTGCTACATGGAAAGCTTGTTCGTGTATTCATATGTTATTGAATGTTCCTAGTTACTCGTTTGAAGCGGAAGGCGTTAAGGAGTCGCTGGTAGTCACGTTTAGTCGGACGTCATTTTCCCGTTTTAGAGAAATCCAAAGCAAACCAAGTGCATTGTGGAAGCCTTTACTGCTTTCCATATCAACATGCTATATCTGTCTTCCTGATACTGTAGAGAGACTTTTGGAGAAGTTTGATGGAGGAGGCTTCGCAGTCTGGGTCTCAGCCCTTGGTTATATCTGTTGCAGCTCTTTTGCGCCCGGTTTGTCTGCGGAATCGGAGATAAAGTTGATTGTGTTGACATTGGTCAAGGTGGTGGAACGAATAATGGAGTTAGGAAAGCCAAGAGATGATTTCCTATGGAAGTCCTTCAGTTCATTGATGGAGGCTTCTATACGGCTGAAAGAAGTGCGAGAAGAAAAGGACGAAGAATCTGATGAAAATGAAGAGGAGGAGGAGGACGACAGTGATGAAATAGAAGATGATGAGGATTCTGATGCCGATGAACTTGAAGAAACTGAAGAACAATTTCTGGATAGGTATGCAAAAGCGGCTATTGATTTGGAAAACAATACTCTTATTGAAGAAGGGGATGTGGAAGATTACGACCAGGATATTGAATTGGGTTGTTATGAAGAGGTAGATGAGGGAAGGATCGTCTACTCTTTACTGGAGAAATATCACCCCATCCTGAGCCAGGGACAGGGATGGCCATCGGAGCTCCCAATGAGATTCTTGAATGCACATCCAGAATATACTACGTTTCTCCGACTATCTGGGTAA 3168 42.8 MNVASAGSHDQGQKIAAAAYLKNLSRRNTEGEFPCSKVSKGFKDELLRALFQAEPKVLKVLVEVFHSIVVSEFVKQSSWPELVSDLCSAIQNSNLFNNGAKCQWNAINALSVLCTTCRPFQYFLNPKDSKEPVPPQLELLANTIIVPLLAVFHRLVEQALSNHDGREVEIDKILSIVCKCVYFSVRSHMPSSLVPLLPSFCHDLISILDSIKFEAAVSPEYGNVSRLKTAKRSLLIFCVFVTRHRKHTDKLMPHIIKCVLNIVNYSKNAHKLDFLSERIISLGFDVISHVLETGRGWRLVSPHFSTLIHSGIFPSLIMNEKDVSEWEDDPDEYLRKNLPSDLEEVSGWREDLYTARKSAINLLGVIALSKGPPTVTHMNGSSASSKRKKGSKRTNNQCATMGELVVLPFLSKYPIPSDANASQTSIQNSYYGVLIAYGGLLDFLREQQPGYVTFLIRTRVLPLYAVSMCLPYLVASANWVLGELASCLPEEVCAEIYSSLVKALSMPDKEEVSFYPVRVSAAGAIAKLLENDYLPPEWLPLLQVVIGGIGQDDEENSILFQLLSSIMEAGNENVAIHIPHAVLSLVGAISKSIPPNLEPWPQVVERGFAALSVMAQSWENFILEKTEQDASCEWSTSEQATISRSFSSLLQQAWLAPMYSLLSQEMDEDQELLPPPSCIDHSSRLLQFIMVSVTGSNTISELKVSELVSVWADLIADWHSWEESEDFSVFNCIMEVVRLNNKYALKNFFVKPTPSPPAPPVPRRSIVENIGAFINQTISQYPSATWKACSCIHMLLNVPSYSFEAEGVKESLVVTFSRTSFSRFREIQSKPSALWKPLLLSISTCYICLPDTVERLLEKFDGGGFAVWVSALGYICCSSFAPGLSAESEIKLIVLTLVKVVERIMELGKPRDDFLWKSFSSLMEASIRLKEVREEKDEESDENEEEEEDDSDEIEDDEDSDADELEETEEQFLDRYAKAAIDLENNTLIEEGDVEDYDQDIELGCYEEVDEGRIVYSLLEKYHPILSQGQGWPSELPMRFLNAHPEYTTFLRLSG 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2326040 2339950 - Carg05572-RA Car17g00365 164737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00365 1055 Coils Coil 922 949 - -
Car17g00365 1055 MobiDBLite consensus disorder prediction 937 968 - -
Car17g00365 1055 MobiDBLite consensus disorder prediction 931 968 - -
Car17g00365 1055 Coils Coil 951 971 - -
Car17g00365 1055 MobiDBLite consensus disorder prediction 375 394 - -
Car17g00365 1055 Pfam Cse1 142 363 IPR013713 GO:0006886
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00365 - - - cpep:111807225 1949.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00365 Car-Chr17:2326040 Car17g00529 Car-Chr17:4901998 2.94E-09 dispersed
Car17g00365 Car-Chr17:2326040 Car08g00079 Car-Chr8:484390 5.72E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . Sed09g0632 . . . Cma17g00394 . Car17g00365 Cpe12g00345 . Bhi12g01983 Tan06g2808 Cmetu11g2556 . . . Lcy12g0895 . . . . . . . Lsi09g01519 . . Cme11g02111
Vvi5g189 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . . . . . Cma17g00394 . Car17g00365 . . . . . . . . . . . . . . . . Lsi09g01519 . . Cme11g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010694 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 5 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00365 Car_Chr17 FPKM 53.00124 53.116016 79.538422 84.300041 49.409618 47.117447 48.994976 154.90918 177.121567 160.871445